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ggplot2 is an open-source data visualization package for the statistical programming language R.Created by Hadley Wickham in 2005, ggplot2 is an implementation of Leland Wilkinson's Grammar of Graphics—a general scheme for data visualization which breaks up graphs into semantic components such as scales and layers. ggplot2 can serve as a replacement for the base graphics in R and contains a ...
A sina plot is a type of diagram in which numerical data are depicted by points distributed in such a way that the width of the point distribution is proportional to the kernel density. [ 1 ] [ 2 ] Sina plots are similar to violin plots , but while violin plots depict kernel density, sina plots depict the points themselves.
A scatter plot, also called a scatterplot, scatter graph, scatter chart, scattergram, or scatter diagram, [2] is a type of plot or mathematical diagram using Cartesian coordinates to display values for typically two variables for a set of data. If the points are coded (color/shape/size), one additional variable can be displayed.
This line attempts to display the non-random component of the association between the variables in a 2D scatter plot. Smoothing attempts to separate the non-random behaviour in the data from the random fluctuations, removing or reducing these fluctuations, and allows prediction of the response based value of the explanatory variable. [1] [2]
An UpSet Plot showing how movie genres intersect. The largest intersection of two sets is the Comedy-Drama intersection. UpSet plots are a data visualization method for showing set data with more than three intersecting sets. UpSet shows intersections in a matrix, with the rows of the matrix corresponding to the sets, and the columns to the ...
These include affy (ma.plot, mva.pairs), limma (plotMA), marray (maPlot), and edgeR(maPlot) Similar "RA" plots can be generated using the raPlot function in the caroline CRAN R package. An interactive MA plot to filter genes by M, A and p-values, search by names or with a lasso, and save selected genes, is available as an R-Shiny code Enhanced ...
Rug plots are often used in combination with two-dimensional scatter plots by placing a rug plot of the x values of the data along the x-axis, and similarly for the y values. This is the origin of the term "rug plot", as these rug plots with perpendicular markers look like tassels along the edges of the rectangular "rug" of the scatter plot.
On a semi-log plot the spacing of the scale on the y-axis (or x-axis) is proportional to the logarithm of the number, not the number itself. It is equivalent to converting the y values (or x values) to their log, and plotting the data on linear scales. A log–log plot uses the logarithmic scale for both axes, and hence is not a semi-log plot.