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The script editor in Fiji supports rapid prototyping of scripts and ImageJ plugins, making Fiji a powerful tool to develop new image processing algorithms and explore new image processing techniques with ImageJ. [16] [17]
ImageJ is a Java-based image processing program developed at the National Institutes of Health and the Laboratory for Optical and Computational Instrumentation (LOCI, University of Wisconsin). [ 2 ] [ 3 ] Its first version, ImageJ 1.x, is developed in the public domain , while ImageJ2 and the related projects SciJava , ImgLib2 , and SCIFIO are ...
Fiji – ImageJ-based image processing; Ilastik – Image-classification and segmentation software; ImageJ – Image processing application developed at the National Institutes of Health; IMOD – 2D and 3D analysis of electron microscopy data; ITK – Development framework used for creation of image segmentation and registration programs
Simple interactive object extraction (SIOX) is an algorithm for extracting foreground objects from color images and videos with very little user interaction. [1] It has been implemented as "foreground selection" tool in the GIMP (since version 2.3.3), as part of the tracer tool in Inkscape (since 0.44pre3), and as function in ImageJ and Fiji (plug-in).
ClearVolume [1] is an open source real-time live 3D visualization library designed for high-end volumetric light sheet microscopes.ClearVolume enables the live visualization of microscope data - allowing the biologists to immediately decide whether a sample is worth imaging.
Pre-trained workflows can be executed directly from ImageJ/Fiji using the ilastik-ImageJ plugin. [4] Pre-trained ilastik Pixel Classification workflows can be run directly in Python with the ilastik Python package, [5] which is available via conda.
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CellProfiler interfaces with the high-performance scientific libraries NumPy and SciPy for many mathematical operations, the Open Microscopy Environment [11] Consortium’s Bio-Formats library for reading more than 100 image file formats, ImageJ for use of plugins and macros, and ilastik for pixel-based classification. [12]