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The idea of sequence quality scores can be traced back to the original description of the SCF file format by Rodger Staden's group in 1992. [3] In 1995, Bonfield and Staden proposed a method to use base-specific quality scores to improve the accuracy of consensus sequences in DNA sequencing projects.
The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore an alignment's phylogenetic implications; or, to predict the structure and functional properties of a specific sequence, e.g., comparative modelling.
SHAZAM Professional Edition contains comprehensive data import capabilities through its Data Connector and SQL editor allowing the import of machine data source such as tab, space or comma separated text formats, other file-based proprietary binary formats (including various Microsoft Excel formats) as well as Microsoft Access or any other LAN ...
The serial nature of the paper tape memory made programming the SSEC more like the calculators from the World War II era. For example, "loops" were usually literal loops of paper tape glued together. For each new program, tapes and card decks were literally "loaded" on the readers, and a plugboard changed in the printer to modify output formatting.
Given a set of contigs, the N50 is defined as the sequence length of the shortest contig at 50% of the total assembly length. It can be thought of as the point of half of the mass of the distribution; the number of bases from all contigs longer than the N50 will be close to the number of bases from all contigs shorter than the N50 .
"A Short Preview of Free Statistical Software Packages for Teaching Statistics to Industrial Technology Majors" (PDF). Journal of Industrial Technology. 21 (2). Archived from the original (PDF) on October 25, 2005.
The FAST4 format was invented as a derivative of the FASTQ format where each of the 4 bases (A,C,G,T) had separate probabilities stored. It was part of the Swift basecaller, an open source package for primary data analysis on next-gen sequence data "from images to basecalls". The FAST5 format was invented as an extension of the FAST4 format.
wapRNA This is a free web-based application for the processing of high-throughput RNA-Seq data (wapRNA) from next generation sequencing (NGS) platforms, such as Genome Analyzer of Illumina Inc. (Solexa) and SOLiD of Applied Biosystems (SOLiD). wapRNA provides an integrated tool for RNA sequence, refers to the use of High-throughput sequencing ...