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The three-domain system adds a level of classification (the domains) "above" the kingdoms present in the previously used five- or six-kingdom systems.This classification system recognizes the fundamental divide between the two prokaryotic groups, insofar as Archaea appear to be more closely related to eukaryotes than they are to other prokaryotes – bacteria-like organisms with no cell nucleus.
Bacterial phyla constitute the major lineages of the domain Bacteria. While the exact definition of a bacterial phylum is debated, a popular definition is that a bacterial phylum is a monophyletic lineage of bacteria whose 16S rRNA genes share a pairwise sequence identity of ~75% or less with those of the members of other bacterial phyla. [2]
The two-domain system is a biological classification by which all organisms in the tree of life are classified into two domains, Bacteria and Archaea. [1] [2] [3] It emerged from development of knowledge of archaea diversity and challenges the widely accepted three-domain system that classifies life into Bacteria, Archaea, and Eukarya. [4]
Whereas modern molecular studies point towards the root of the tree of life being between a monophyletic Bacteria and Archaea+Eukarya , in the Cavalier-Smith theory, the last common ancestor (cenancestor) was a Gram-negative diderm bacterium with peptidoglycan, while Archaea and Eukaryotes stem from Actinobacteria. [1] [2]
A speculatively rooted tree for RNA genes, showing major branches Bacteria, Archaea, and Eukaryota The three-domain tree and the eocyte hypothesis (two-domain tree), 2008. [7] Phylogenetic tree showing the relationship between the eukaryotes and other forms of life, 2006. [8] Eukaryotes are colored red, archaea green, and bacteria blue.
This led to the conclusion that Archaea and Eukarya shared a common ancestor more recent than Eukarya and Bacteria. [73] The development of the nucleus occurred after the split between Bacteria and this common ancestor. [73] [2] One property unique to archaea is the abundant use of ether-linked lipids in their cell membranes.
Woese’s advances in molecular sequencing and phylogenetic organization allowed for a better understanding of the three domains of life - the Bacteria, Archaea, and Eukaryotes. Regarding their varying types of shared rRNA, the small subunit rRNA was deemed as the best molecule to sequence to distinguish phylogenetic relationships because of ...
While the existence of Eukarya and Prokarya were already accepted, Woese was responsible for the distinction between Bacteria and Archaea. [3] Despite initial criticism and controversy surrounding his claims, Woese's three domain system, based on his work regarding the role of rRNA in the evolution of modern life, has become widely accepted. [4]