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Free body and kinetic diagrams of an inclined block. In dynamics a kinetic diagram is a pictorial device used in analyzing mechanics problems when there is determined to be a net force and/or moment acting on a body. They are related to and often used with free body diagrams, but depict only the net force and moment rather than all of the ...
The difference between states A and B may be in the atom types involved, in which case the ΔF obtained is for "mutating" one molecule onto another, or it may be a difference of geometry, in which case one obtains a free-energy map along one or more reaction coordinates. This free-energy map is also known as a potential of mean force (PMF).
In the physical science of dynamics, rigid-body dynamics studies the movement of systems of interconnected bodies under the action of external forces.The assumption that the bodies are rigid (i.e. they do not deform under the action of applied forces) simplifies analysis, by reducing the parameters that describe the configuration of the system to the translation and rotation of reference ...
The presence of multiple domains in proteins gives rise to a great deal of flexibility and mobility, leading to protein domain dynamics. [1] Domain motions can be inferred by comparing different structures of a protein (as in Database of Molecular Motions ), or they can be directly observed using spectra [ 13 ] [ 2 ] measured by neutron spin ...
In classical mechanics, Euler's rotation equations are a vectorial quasilinear first-order ordinary differential equation describing the rotation of a rigid body, using a rotating reference frame with angular velocity ω whose axes are fixed to the body.
The configuration space and the phase space of the dynamical system both are Euclidean spaces, i. e. they are equipped with a Euclidean structure.The Euclidean structure of them is defined so that the kinetic energy of the single multidimensional particle with the unit mass = is equal to the sum of kinetic energies of the three-dimensional particles with the masses , …,:
A microcanonical molecular dynamics trajectory may be seen as an exchange of potential and kinetic energy, with total energy being conserved. For a system of N particles with coordinates X {\displaystyle X} and velocities V {\displaystyle V} , the following pair of first order differential equations may be written in Newton's notation as
Kinematics is a subfield of physics and mathematics, developed in classical mechanics, that describes the motion of points, bodies (objects), and systems of bodies (groups of objects) without considering the forces that cause them to move.