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3D Slicer Extensible, free open source multi-purpose software for visualization and analysis. Amira 3D visualization and analysis software; Analysis of Functional NeuroImages (AFNI) Analyze developed by the Biomedical Imaging Resource (BIR) at Mayo Clinic. Brain Image Analysis Package; CamBA; Caret Van Essen Lab, Washington University in St. Louis
"afni_proc.py" is a pre-made script that will run fMRI data from a single subject through a series of pre-processing steps, starting with the raw data. The default settings will perform the following pre-processing steps and finish with a basic regression analysis: [8] Slice timing: [9] Each 3D brain image is composed of multiple 2D images ...
A number of online neuroscience databases are available which provide information regarding gene expression, neurons, macroscopic brain structure, and neurological or psychiatric disorders. Some databases contain descriptive and numerical data, some to brain function, others offer access to 'raw' imaging data, such as postmortem brain sections ...
Galaxy is a web platform for data-intensive biology using geographically-distributed supercomputers. [56] LabKey Server is an extensible platform for integrating, analyzing and sharing all types of biomedical research data. It provides secure, web-based access to research data and includes a customizable data processing pipeline.
Functional MRI FABBER FABBER is a Bayesian model fitting tool intended for use in task modelling of ASL data.: FEAT Model-based FMRI analysis with straightforward but powerful GUI: data preprocessing (including slice timing correction, MCFLIRT motion correction and PRELUDE+FUGUE EPI unwarping); FILM GLM timeseries analysis with prewhitening; registration to structural and/or standard space ...
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The Brain Imaging Data Structure (BIDS) is a standard for organizing, annotating, and describing data collected during neuroimaging experiments. It is based on a formalized file and directory structure and metadata files (based on JSON and TSV ) with controlled vocabulary . [ 1 ]
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