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The worst-case space usage of a suffix tree is seen with a fibonacci word, giving the full nodes. An important choice when making a suffix tree implementation is the parent-child relationships between nodes. The most common is using linked lists called sibling lists. Each node has a pointer to its first child, and to the next node in the child ...
An alternative to building a generalized suffix tree is to concatenate the strings, and build a regular suffix tree or suffix array for the resulting string. When hits are evaluated after a search, global positions are mapped into documents and local positions with some algorithm and/or data structure, such as a binary search in the starting ...
Final suffix tree using Ukkonen's algorithm (example). To better illustrate how a suffix tree is constructed using Ukkonen's algorithm, we can consider the string S = xabxac. Start with an empty root node. Construct for S[1] by adding the first character of the string. Rule 2 applies, which creates a new leaf node.
Tries support various operations: insertion, deletion, and lookup of a string key. Tries are composed of nodes that contain links, which either point to other suffix child nodes or null. As for every tree, each node but the root is pointed to by only one other node, called its parent.
The longest common substrings of a set of strings can be found by building a generalized suffix tree for the strings, and then finding the deepest internal nodes which have leaf nodes from all the strings in the subtree below it. The figure on the right is the suffix tree for the strings "ABAB", "BABA" and "ABBA", padded with unique string ...
Given the suffix array and the LCP array of a string =,, … $ of length +, its suffix tree can be constructed in () time based on the following idea: Start with the partial suffix tree for the lexicographically smallest suffix and repeatedly insert the other suffixes in the order given by the suffix array.
This problem can be solved in linear time and space () by building a suffix tree for the string (with a special end-of-string symbol like '$' appended), and finding the deepest internal node in the tree with more than one child. Depth is measured by the number of characters traversed from the root.
Suffix arrays are closely related to suffix trees: . Suffix arrays can be constructed by performing a depth-first traversal of a suffix tree. The suffix array corresponds to the leaf-labels given in the order in which these are visited during the traversal, if edges are visited in the lexicographical order of their first character.