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  2. Template modeling score - Wikipedia

    en.wikipedia.org/wiki/Template_modeling_score

    The TM-score indicates the similarity between two structures by a score between (,], where 1 indicates a perfect match between two structures (thus the higher the better). [1] Generally scores below 0.20 corresponds to randomly chosen unrelated proteins whereas structures with a score higher than 0.5 assume roughly the same fold. [ 2 ]

  3. T-Coffee - Wikipedia

    en.wikipedia.org/wiki/T-Coffee

    T-Coffee (Tree-based Consistency Objective Function for Alignment Evaluation) is a multiple sequence alignment software using a progressive approach. [1] It generates a library of pairwise alignments to guide the multiple sequence alignment.

  4. Structural alignment software - Wikipedia

    en.wikipedia.org/wiki/Structural_alignment_software

    server and download: L. Holm: 1993 TM-align TM-score based protein structure alignment: Cα: Pair: nil: server and download: Y. Zhang & J. Skolnick: 2005 mTM-align Multiple protein structure alignment based on TM-align Cα Multi No server and download: R. Dong, Z. Peng, Y. Zhang & J. Yang 2018 VAST Vector Alignment Search Tool: SSE: Pair: nil ...

  5. I-TASSER - Wikipedia

    en.wikipedia.org/wiki/I-TASSER

    I-TASSER is a template-based method for protein structure and function prediction. [1] The pipeline consists of six consecutive steps: 1, Secondary structure prediction by PSSpred

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  7. Trimean - Wikipedia

    en.wikipedia.org/wiki/Trimean

    Despite its simplicity, the trimean is a remarkably efficient estimator of population mean. More precisely, for a large data set (over 100 points [3]) from a symmetric population, the average of the 18th, 50th, and 82nd percentile is the most efficient 3-point L-estimator, with 88% efficiency. [4]

  8. Forest plot - Wikipedia

    en.wikipedia.org/wiki/Forest_plot

    The chart portion of the forest plot will be on the right hand side and will indicate the mean difference in effect between the test and control groups in the studies. A more precise rendering of the data shows up in number form in the text of each line, while a somewhat less precise graphic representation shows up in chart form on the right.

  9. Completely randomized design - Wikipedia

    en.wikipedia.org/wiki/Completely_randomized_design

    The experiment compares the values of a response variable based on the different levels of that primary factor. For completely randomized designs, the levels of the primary factor are randomly assigned to the experimental units .

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