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Bubble sort, sometimes referred to as sinking sort, is a simple sorting algorithm that repeatedly steps through the input list element by element, comparing the current element with the one after it, swapping their values if needed. These passes through the list are repeated until no swaps have to be performed during a pass, meaning that the ...
Timsort is a hybrid, stable sorting algorithm, derived from merge sort and insertion sort, designed to perform well on many kinds of real-world data. It was implemented by Tim Peters in 2002 for use in the Python programming language. The algorithm finds subsequences of the data that are already ordered (runs) and uses them to sort the ...
As sorting is memory intensive and BAM files can be large, this command supports a sectioning mode (with the -m options) to use at most a given amount of memory and generate multiple output file. These files can then be merged to produce a complete sorted BAM file [TODO - investigate the details of this more carefully].
Radix sort is an algorithm that sorts numbers by processing individual digits. n numbers consisting of k digits each are sorted in O(n · k) time. Radix sort can process digits of each number either starting from the least significant digit (LSD) or starting from the most significant digit (MSD). The LSD algorithm first sorts the list by the ...
Cycle sort is an in-place, unstable sorting algorithm, a comparison sort that is theoretically optimal in terms of the total number of writes to the original array, unlike any other in-place sorting algorithm. It is based on the idea that the permutation to be sorted can be factored into cycles, which can individually be rotated to give a ...
Recursively sort the "equal to" partition by the next character (key). Given we sort using bytes or words of length W bits, the best case is O(KN) and the worst case O(2 K N) or at least O(N 2) as for standard quicksort, given for unique keys N<2 K, and K is a hidden constant in all standard comparison sort algorithms including
Samplesort is a sorting algorithm that is a divide and conquer algorithm often used in parallel processing systems. [1] Conventional divide and conquer sorting algorithms partitions the array into sub-intervals or buckets. The buckets are then sorted individually and then concatenated together.
In computer science, smoothsort is a comparison-based sorting algorithm.A variant of heapsort, it was invented and published by Edsger Dijkstra in 1981. [1] Like heapsort, smoothsort is an in-place algorithm with an upper bound of O(n log n) operations (see big O notation), [2] but it is not a stable sort.