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The term sister group is used in phylogenetic analysis, however, only groups identified in the analysis are labeled as "sister groups".. An example is birds, whose commonly cited living sister group is the crocodiles, but that is true only when discussing extant organisms; [3] [4] when other, extinct groups are considered, the relationship between birds and crocodiles appears distant.
The idea of a tree of life arose from ancient notions of a ladder-like progression from lower into higher forms of life (such as in the Great Chain of Being).Early representations of "branching" phylogenetic trees include a "paleontological chart" showing the geological relationships among plants and animals in the book Elementary Geology, by Edward Hitchcock (first edition: 1840).
If a phylogenetic tree is reconstructed from DNA sequence data of a particular gene, a hard polytomy arises when three or more sampled genes trace their ancestry to a single gene in an ancestral organism. In contrast, a soft polytomy stems from branches on gene trees of finite temporal duration but for which no substitutions have occurred. [7]
A stem group is a paraphyletic assemblage composed of the members of a pan-group or total group, above, minus the crown group itself (and therefore minus all living members of the pan-group). This leaves primitive relatives of the crown groups , back along the phylogenetic line to (but not including) the last common ancestor of the crown group ...
Based on a whole-genome analysis of the bird orders, the kagu and sunbittern (Eurypygiformes) and the three species of tropicbirds (Phaethontiformes) together styled as the Eurypygimorphae are the closest sister group of the Aequornithes, [6] in a clade later named Phaethoquornithes. [12]
Phylogenetic tree of early lophophorates. Fossil discoveries lead to the hypothesis that Annelida and the lophophorates are more closely related to each other than any other phyla. Because of the body plan of lophotrochozoan fossils, a phylogenetic analysis found the lophophorates as the sister group of annelids.
The diagram shows three common ways of doing this. For previously defined clades A, B, and C, the clade X can be defined as: The three most common ways to define the name of a clade: node-based, branch-based and apomorphy-based definition. The tree represents a phylogenetic hypothesis of the relations of A, B and C.
Phylogenetic analysis by Garwood et al. (2014) showing the diversification of Opiliones. Harvestmen are an order of arachnids often confused with spiders, though the two orders are not closely related. Research on harvestman phylogeny (that is, the phylogenetic tree) is in a state of flux.