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A: Palindrome, B: Loop, C: Stem. A palindromic sequence is a nucleic acid sequence in a double-stranded DNA or RNA molecule whereby reading in a certain direction (e.g. 5' to 3') on one strand is identical to the sequence in the same direction (e.g. 5' to 3') on the complementary strand. This definition of palindrome thus depends on ...
The intervening sequence of nucleotides between the initial sequence and the reverse complement can be any length including zero. For example, 5'---TTACGnnnnnn CGTAA---3' is an inverted repeat sequence. When the intervening length is zero, the composite sequence is a palindromic sequence. [2]
This category is for articles about palindromes and not articles with palindromic names. ... Palindromic prime; Palindromic sequence; The Palindromist; S. Sator ...
An asymmetric three allele STR locus that can be used to observe deletions and recombinational rearrangements in the palindromic region of the Y chromosome. 17-29 (many incomplete alleles) nomenclature: DYF401 DYF401 is a palindromic region marker. DYF406S1 11 DYF408 DYF408 is a palindromic region marker. DYF411 DYF411 is a palindromic region ...
This E-box consists of the DNA sequence CANNTG, where N can be any nucleotide. [ 7 ] 1994: Harrison's [ 12 ] and Pabo's [ 13 ] groups crystallize bHLH proteins bound to E-boxes, demonstrating that the parallel 4-helix bundle motif loop orients the basic sequences to interact with specific nucleotides in the major groove of the E-box.
For example, there are two PstI recognition sites in the following DNA sequence fragment, starting at base 9 and 31 respectively. A recognition sequence is a specific sequence, usually very short (less than 10 bases). Depending on the degree of specificity of the protein, a DNA-binding protein can bind to more than one specific sequence.
These are known as palindromic (P) nucleotides due to the palindromic nature of the sequence produced when DNA repair enzymes resolve the overhang. [18] The process of hairpin opening by Artemis is a crucial step of V(D)J recombination and is defective in the severe combined immunodeficiency (scid) mouse model .
In computer science a palindrome tree, also called an EerTree, [1] is a type of search tree, that allows for fast access to all palindromes contained in a string.They can be used to solve the longest palindromic substring, the k-factorization problem [2] (can a given string be divided into exactly k palindromes), palindromic length of a string [3] (what is the minimum number of palindromes ...