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As of 2002, the number of classified green plant species was estimated to be around 370,000, however, there are probably many thousands more yet unclassified. [10] Despite this number, very few of these species have detailed DNA sequence information to date; 125,426 species in GenBank, as of 11 April 2012, [11] but most (>95%) having DNA sequence for only one or two genes. "...almost none of ...
In 2014, the second version of the website was launched. As of March 2015, the database listed 2.7 million accessions stored in 446 institutes from 252 countries. The source code, notably for the web server, is available online. [3]
Avibase – the World Bird Database [4] Birds, distribution, taxonomy X Avibase is an extensive database information system about all birds of the world, containing over 27 million records about 10,000 species and 22,000 subspecies of birds, including distribution information for 20,000 regions, taxonomy, synonyms in several languages and more
The site is a resource for identifying taxonomic information (scientific names) as well as common names [3] on more than 500,000 accessions (distinct varieties, cultivars etc.) of plants covering 10,000 species; [4] [5] both economically important ones [3] and wild species.
Where the Level 3 area is subdivided into Level 4 "basic recording units", a two letter code is appended; [25] thus "NWG-IJ" represents Irian Jaya, [26] the Indonesian part of New Guinea. Where the Level 3 area is not subdivided, "OO" may be added to create a five letter code to show that the Level 4 unit is identical to the Level 3 area. [25]
Model plant: 206.7 Mbp 32,670 [58] 8: 2011 [58] 8.3X sequence coverage, analyzed on ABI 3730XL capillary sequencers Arabidopsis thaliana Ecotype:Columbia: Brassicaceae: Model plant: 135 Mbp: 27,655 [59] 5 AGI 2000 [60] Barbarea vulgaris. G-type. Brassicaceae: Model plant for specialised metabolites and plant defenses 167.7 Mbp 25,350 8 2017 [61]
Contains manual curations of public transcriptome datasets, focusing on medical and plant biology data. Individual experiments are normalised across the full database to allow comparison of gene expression across diverse experiments. Full functionality requires licence purchase, with free access to a limited functionality. RefEx [172] DDBJ: All
The Database Issue of NAR is freely available, and categorizes many of the public biological databases. A companion database to the issue called the Online Molecular Biology Database Collection lists 1,380 online databases. [15] Other collections of databases exist such as MetaBase and the Bioinformatics Links Collection. [16] [17]