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The 1000 Plant Transcriptomes Initiative (1KP) was an international research effort to establish the most detailed catalogue of genetic variation in plants. It was announced in 2008 and headed by Gane Ka-Shu Wong and Michael Deyholos of the University of Alberta .
The site is a resource for identifying taxonomic information (scientific names) as well as common names [3] on more than 500,000 accessions (distinct varieties, cultivars etc.) of plants covering 10,000 species; [4] [5] both economically important ones [3] and wild species.
Avibase – the World Bird Database [4] Birds, distribution, taxonomy X Avibase is an extensive database information system about all birds of the world, containing over 27 million records about 10,000 species and 22,000 subspecies of birds, including distribution information for 20,000 regions, taxonomy, synonyms in several languages and more
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queryable-rna-seq-database Formally known as the Queryable RNA-Seq Database, this system is designed to simplify the process of RNA-seq analysis by providing the ability upload the result data from RNA-Seq analysis into a database, store it, and query it in many different ways.
The scheme is one of a number developed by Biodiversity Information Standards particularly aimed at taxonomic databases. [2] The starting point was the "need for an agreed system of geographical units at approximately 'country' level and upwards for use in recording plant distributions". [1]
Ensembl genome database project is a scientific project at the European Bioinformatics Institute, which provides a centralized resource for geneticists, molecular biologists and other researchers studying the genomes of our own species and other vertebrates and model organisms.
For example, a database of SNPs used in Douglas fir breeding programs was created by de novo transcriptome analysis in the absence of a sequenced genome. [159] Similarly, genes that function in the development of cardiac, muscle, and nervous tissue in lobsters were identified by comparing the transcriptomes of the various tissue types without ...