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As of 2002, the number of classified green plant species was estimated to be around 370,000, however, there are probably many thousands more yet unclassified. [10] Despite this number, very few of these species have detailed DNA sequence information to date; 125,426 species in GenBank, as of 11 April 2012, [11] but most (>95%) having DNA sequence for only one or two genes. "...almost none of ...
All forms of life and a map of known occurrences with data about such occurrences. Also taxonomy and links to other databases Georgia Biodiversity Database [14] Georgia (country) biodiversity website X X X X X X X X Checklists covering ca. 11,000 of plants and animals recorded for Georgia (Central and Western Caucasus) HerpNET [15]
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Contains manual curations of public transcriptome datasets, focusing on medical and plant biology data. Individual experiments are normalised across the full database to allow comparison of gene expression across diverse experiments. Full functionality requires licence purchase, with free access to a limited functionality. RefEx [172] DDBJ: All
queryable-rna-seq-database Formally known as the Queryable RNA-Seq Database, this system is designed to simplify the process of RNA-seq analysis by providing the ability upload the result data from RNA-Seq analysis into a database, store it, and query it in many different ways.
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RNA-Seq data may be directly assembled into transcripts using sequence assembly.Two main categories of sequence assembly are often distinguished: . de novo transcriptome assembly - especially important when a reference genome is not available for a given species.
UniGene was a NCBI database of the transcriptome and thus, despite the name, not primarily a database for genes. Each entry is a set of transcripts that appear to stem from the same transcription locus (i.e. gene or expressed pseudogene). Information on protein similarities, gene expression, cDNA clones, and genomic location is included with ...