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The DNA model shown (far right) is a space-filling, or CPK, model of the DNA double helix. Animated molecular models, such as the wire, or skeletal, type shown at the top of this article, allow one to visually explore the three-dimensional (3D) structure of DNA. Another type of DNA model is the space-filling, or CPK, model.
View 3D Model build Min MD MC REM Crt Int Exp Imp Lig ... Coarse-grained models of DNA, RNA: ... Interactive simulations: Proprietary: www.YASARA.org:
Some progress is already being done including the wonderful work by User:emw who has created an extension to allow interactive 3D models of proteins and DNA on Wikipedia, [dead link ] large libraries of 3d models exist for molecules that could imported. Open projects do exist for displaying 3d models online by Mozilla and Google.
In DNA double helix, the two strands of DNA are held together by hydrogen bonds. The nucleotides on one strand base pairs with the nucleotide on the other strand. The secondary structure is responsible for the shape that the nucleic acid assumes. The bases in the DNA are classified as purines and pyrimidines. The purines are adenine and guanine ...
Mitochondrial_DNA_3D.webm (WebM audio/video file, VP9/Vorbis, length 33 s, 640 × 480 pixels, 829 kbps overall, file size: 3.24 MB) This is a file from the Wikimedia Commons . Information from its description page there is shown below.
Several isomers exist with the formula H−(C=O)−(CH 2)−(CHOH) 3 −H, but in deoxyribose all the hydroxyl groups are on the same side in the Fischer projection.The term "2-deoxyribose" may refer to either of two enantiomers: the biologically important d-2-deoxyribose and to the rarely encountered mirror image l-2-deoxyribose.
Cytosine can be found as part of DNA, as part of RNA, or as a part of a nucleotide. As cytidine triphosphate (CTP), it can act as a co-factor to enzymes, and can transfer a phosphate to convert adenosine diphosphate (ADP) to adenosine triphosphate (ATP). In DNA and RNA, cytosine is paired with guanine.
Template detection, alignment, 3D modeling: Interactive webserver with help facility Phyre, Phyre2 Remote template detection, alignment, 3D modeling, multi-templates, ab initio: Webserver with job manager, automatically updated fold library, genome searching and other facilities I-TASSER: Threading fragment structure reassembly