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  2. ENCODE - Wikipedia

    en.wikipedia.org/wiki/ENCODE

    The Encyclopedia of DNA Elements (ENCODE) is a public research project which aims "to build a comprehensive parts list of functional elements in the human genome." [2]ENCODE also supports further biomedical research by "generating community resources of genomics data, software, tools and methods for genomics data analysis, and products resulting from data analyses and interpretations."

  3. BED (file format) - Wikipedia

    en.wikipedia.org/wiki/BED_(file_format)

    Thus, the nucleotide with the coordinate 1 in a genome will have a value of 0 in column 2 and a value of 1 in column 3. A thousand-base BED interval with the following start and end: chr7 0 1000 would convert to the following 1-based "human" genome coordinates, as used by a genome browser such as UCSC: chr7 1 1000

  4. GENCODE - Wikipedia

    en.wikipedia.org/wiki/GENCODE

    GENCODE is a scientific project in genome research and part of the ENCODE (ENCyclopedia Of DNA Elements) scale-up project.. The GENCODE consortium was initially formed as part of the pilot phase of the ENCODE project to identify and map all protein-coding genes within the ENCODE regions (approx. 1% of Human genome). [2]

  5. Functional genomics - Wikipedia

    en.wikipedia.org/wiki/Functional_genomics

    The ENCODE (Encyclopedia of DNA elements) project is an in-depth analysis of the human genome whose goal is to identify all the functional elements of genomic DNA, in both coding and non-coding regions. Important results include evidence from genomic tiling arrays that most nucleotides are transcribed as coding transcripts, non-coding RNAs, or ...

  6. Biological data visualization - Wikipedia

    en.wikipedia.org/wiki/Biological_data_visualization

    Genome browser: Genome browsers like UCSC Genome Browser and Ensembl provide comprehensive platforms for visualizing sequence alignments across entire genomes. Researchers can explore DNA annotation , regulatory elements, and comparative genomics data within the context of genome sequences.

  7. Nvidia makes its GPU-powered genome sequencing tool available ...

    www.aol.com/news/nvidia-makes-gpu-powered-genome...

    Nvidia is making its Parabricks tool available for free for 90 days (with the possibility of extension, depending on needs) to any researcher currently working on any effort to combat the ongoing ...

  8. Vertebrate Genome Annotation Project - Wikipedia

    en.wikipedia.org/wiki/Vertebrate_Genome...

    The Vertebrate Genome Annotation (VEGA) database was first made public in 2004 by the Wellcome Trust Sanger Institute. It was designed to view manual annotations of human, mouse and zebrafish genomic sequences, and it is the central cache for genome sequencing centers to deposit their annotation of human chromosomes. [6]

  9. MicrobesOnline - Wikipedia

    en.wikipedia.org/wiki/MicrobesOnline

    The first one is the Tree Browser, which draws a species tree or a gene tree for the selected gene and its gene neighbourhood. The second one is the Orthology Browser, which is an extension of the Genome Browser and demonstrates the selected gene within the context of its gene neighbourhood aligned with orthologs in other selected genomes. [10]

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