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While t-SNE plots often seem to display clusters, the visual clusters can be strongly influenced by the chosen parameterization (especially the perplexity) and so a good understanding of the parameters for t-SNE is needed. Such "clusters" can be shown to even appear in structured data with no clear clustering, [13] and so
One of the main limitation of the Taylor diagram is the absence of explicit information about model biases. One approach suggested by Taylor (2001) was to add lines, whose length is equal to the bias to each data point. An alternative approach, originally described by Elvidge et al., 2014 [17], is to show the bias of the models via a color ...
General numerical computing package with many extension modules. Syntax mostly compatible with MATLAB IGOR Pro: WaveMetrics 1986 1988 8.00 May 22, 2018: $995 (commercial) $225 upgrade, $499 (academic) $175 upgrade, $85 (student) Proprietary: interactive graphics, programmable, 2D/3D, used for science and engineering, large data sets. J ...
Nonlinear dimensionality reduction, also known as manifold learning, is any of various related techniques that aim to project high-dimensional data, potentially existing across non-linear manifolds which cannot be adequately captured by linear decomposition methods, onto lower-dimensional latent manifolds, with the goal of either visualizing ...
Interpretation of PAE values allows scientists to understand the level of confidence in the predicted structure of a protein: Lower PAE values between residue pairs from different domains indicate that the model predicts well-defined relative positions and orientations for those domains.
Self-organizing maps, like most artificial neural networks, operate in two modes: training and mapping. First, training uses an input data set (the "input space") to generate a lower-dimensional representation of the input data (the "map space"). Second, mapping classifies additional input data using the generated map.
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While historical data-group plots (bar charts, box plots, and violin plots) do not display the comparison, estimation plots add a second axis to explicitly visualize the effect size. [28] The Gardner–Altman plot. Left: A conventional bar chart, using asterisks to show that the difference is 'statistically significant.'