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2. List of RNA-Seq bioinformatics tools - Wikipedia

   en.wikipedia.org/wiki/List_of_RNA-Seq...

   The pipeline employs tools like Bowtie, TopHat, ArrayExpressHTS and SAMtools. Also, edgeR or DESeq to perform differential expression. MultiDE; Myrna is a pipeline tool that runs in a cloud environment (Elastic MapReduce) or in a unique computer for estimating differential gene expression in RNA-Seq datasets. Bowtie is employed for short read ...

3. Pipeline (computing) - Wikipedia

   en.wikipedia.org/wiki/Pipeline_(computing)

   In computing, a pipeline or data pipeline [1] is a set of data processing elements connected in series, where the output of one element is the input of the next one. The elements of a pipeline are often executed in parallel or in time-sliced fashion. Some amount of buffer storage is often inserted between elements. Computer-related pipelines ...

4. List of sequence alignment software - Wikipedia

   en.wikipedia.org/wiki/List_of_sequence_alignment...

   Quantify and manage large quantities of short-read sequence data. CASHX pipeline contains a set of tools that can be used together, or separately as modules. This algorithm is very accurate for perfect hits to a reference genome. No Proprietary, freeware for academic and noncommercial use Cloudburst Short-read mapping using Hadoop MapReduce

5. Extract, transform, load - Wikipedia

   en.wikipedia.org/wiki/Extract,_transform,_load

   ETL tools in most cases contain a GUI that helps users conveniently transform data, using a visual data mapper, as opposed to writing large programs to parse files and modify data types. While ETL tools have traditionally been for developers and IT staff, research firm Gartner wrote that the new trend is to provide these capabilities to ...

6. List of statistical software - Wikipedia

   en.wikipedia.org/wiki/List_of_statistical_software

   Orange, a data mining, machine learning, and bioinformatics software; Pandas – High-performance computing (HPC) data structures and data analysis tools for Python in Python and Cython (statsmodels, scikit-learn) Perl Data Language – Scientific computing with Perl; Ploticus – software for generating a variety of graphs from raw data

7. Pipeline (software) - Wikipedia

   en.wikipedia.org/wiki/Pipeline_(software)

   For performance, most operating systems implementing pipes use pipe buffers, which allow the source process to provide more data than the destination process is currently able or willing to receive. Under most Unixes and Unix-like operating systems, a special command is also available, typically called "buffer", that implements a pipe buffer of ...