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ggplot2 is an open-source data visualization package for the statistical programming language R.Created by Hadley Wickham in 2005, ggplot2 is an implementation of Leland Wilkinson's Grammar of Graphics—a general scheme for data visualization which breaks up graphs into semantic components such as scales and layers. ggplot2 can serve as a replacement for the base graphics in R and contains a ...
The linear–log type of a semi-log graph, defined by a logarithmic scale on the x axis, and a linear scale on the y axis. Plotted lines are: y = 10 x (red), y = x (green), y = log(x) (blue). In science and engineering, a semi-log plot/graph or semi-logarithmic plot/graph has one axis on a logarithmic scale, the other on a linear scale.
UpSet plots became popular as they became available as an R-library based on ggplot2, [3] and were subsequently re-implemented in various programming languages, such as Python, and others. [4] As of January 2024, UpSetR has been downloaded from CRAN more than 1.5 million times, although it was last updated 5 years ago. [ 5 ]
The researcher would then plot the data in a scatter plot, assigning "lung capacity" to the horizontal axis, and "time holding breath" to the vertical axis. [ citation needed ] A person with a lung capacity of 400 cl who held their breath for 21.7 s would be represented by a single dot on the scatter plot at the point (400, 21.7) in the ...
A base-10 log scale is used for the Y-axis of the bottom left graph, and the Y-axis ranges from 0.1 to 1000. The top right graph uses a log-10 scale for just the X-axis, and the bottom right graph uses a log-10 scale for both the X axis and the Y-axis. Presentation of data on a logarithmic scale can be helpful when the data:
It is also known as Principal Coordinates Analysis (PCoA), Torgerson Scaling or Torgerson–Gower scaling. It takes an input matrix giving dissimilarities between pairs of items and outputs a coordinate matrix whose configuration minimizes a loss function called strain, [2] which is given by (,,...,) = (, (),) /, where denote vectors in N-dimensional space, denotes the scalar product between ...
The MA plot puts the variable M on the y-axis and A on the x-axis and gives a quick overview of the distribution of the data. In many microarray gene expression experiments, an underlying assumption is that most of the genes would not see any change in their expression; therefore, the majority of the points on the y -axis ( M ) would be located ...
The use of Parallel Coordinates as a visualization technique to show data is also often said to have originated earlier with Henry Gannett in work preceding the Statistical Atlas of the United States for the 1890 Census, for example his "General Summary, Showing the Rank of States, by Ratios, 1880", [2] that shows the rank of 10 measures ...