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Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) is a molecular dynamics program from Sandia National Laboratories. [1] LAMMPS makes use of Message Passing Interface (MPI) for parallel communication and is free and open-source software , distributed under the terms of the GNU General Public License .
The pressure value that is attempted to compute, is such that when plugged into momentum equations a divergence-free velocity field results. The mass imbalance is often also used for control of the outer loop. The name of this class of methods stems from the fact that the correction of the velocity field is computed through the pressure-field.
Free open source MIT: OpenMM: Orac: No No Yes Yes No Yes No Yes No Molecular dynamics simulation program to explore free energy surfaces in biomolecular systems at the atomic level Free open source: Orac download page: NAMD + VMD: Yes Yes Yes Yes No Yes I Yes Yes Fast, parallel MD, CUDA Proprietary, free academic use, source code Beckman ...
This is a list of free and open-source software (FOSS) packages, computer software licensed under free software licenses and open-source licenses. Software that fits the Free Software Definition may be more appropriately called free software ; the GNU project in particular objects to their works being referred to as open-source . [ 1 ]
Although they differ in how they compute or apply the constraints themselves, the constraints are still modelled using Lagrange multipliers which are computed using the Gauss–Seidel method. The original SHAKE algorithm is capable of constraining both rigid and flexible molecules (eg. water, benzene and biphenyl ) and introduces negligible ...
Pressure as a function of the height above the sea level. There are two equations for computing pressure as a function of height. The first equation is applicable to the atmospheric layers in which the temperature is assumed to vary with altitude at a non null lapse rate of : = [,, ()] ′, The second equation is applicable to the atmospheric layers in which the temperature is assumed not to ...
Schematic of D2Q9 lattice vectors for 2D Lattice Boltzmann. Unlike CFD methods that solve the conservation equations of macroscopic properties (i.e., mass, momentum, and energy) numerically, LBM models the fluid consisting of fictive particles, and such particles perform consecutive propagation and collision processes over a discrete lattice.
Schematic view of an SPH convolution Flow around cylinder with free surface modelled with SPH. See [1] for similar simulations.. Smoothed-particle hydrodynamics (SPH) is a computational method used for simulating the mechanics of continuum media, such as solid mechanics and fluid flows.