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If a vector of predictions is generated from a sample of data points on all variables, and is the vector of observed values of the variable being predicted, with ^ being the predicted values (e.g. as from a least-squares fit), then the within-sample MSE of the predictor is computed as
In bioinformatics, the root mean square deviation of atomic positions is the measure of the average distance between the atoms of superimposed proteins. In structure based drug design, the RMSD is a measure of the difference between a crystal conformation of the ligand conformation and a docking prediction.
Mean absolute percentage error; Mean squared error; Mean squared prediction error; Minimum mean-square error; Squared deviations; Peak signal-to-noise ratio; Root mean square deviation; Errors and residuals in statistics
in a set of N predictions, the Brier score measures the mean squared difference between: The predicted probability assigned to the possible outcomes for item i; The actual outcome ; Therefore, the lower the Brier score is for a set of predictions, the better the predictions are calibrated. Note that the Brier score, in its most common ...
If, for example, the out-of-sample mean squared error, also known as the mean squared prediction error, is substantially higher than the in-sample mean square error, this is a sign of deficiency in the model. A development in medical statistics is the use of out-of-sample cross validation techniques in meta-analysis.
Since this is a biased estimate of the variance of the unobserved errors, the bias is removed by dividing the sum of the squared residuals by df = n − p − 1, instead of n, where df is the number of degrees of freedom (n minus the number of parameters (excluding the intercept) p being estimated - 1). This forms an unbiased estimate of the ...
Standard method like Gauss elimination can be used to solve the matrix equation for .A more numerically stable method is provided by QR decomposition method. Since the matrix is a symmetric positive definite matrix, can be solved twice as fast with the Cholesky decomposition, while for large sparse systems conjugate gradient method is more effective.