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The miRBase registry provides a centralised system for assigning new names to microRNA genes. [6] miRBase grew from the microRNA registry resource set up by Sam Griffiths-Jones in 2003. [7] According to Ana Kozomara and Sam Griffiths-Jones miRBase has five aims: [1] To provide a consistent naming system for microRNAs
Meta databases are databases of databases that collect data about data to generate new data. They are capable of merging information from different sources and making it available in a new and more convenient form, or with an emphasis on a particular disease or organism.
Name Description type Link References deepBase: deepBase is a database for annotating and discovering small and long ncRNAs (microRNAs, siRNAs, piRNAs...) from high-throughput deep sequencing data. database: website [25] miRBase: miRBase database is a searchable database of published miRNA sequences and annotation. database: website [26 ...
Proprietary, with a free-to-use edition (Polyhedra Lite) Relational (SQL, ODBC, JDBC) in-memory database system originally developed for use in SCADA and embedded systems, but used in a variety of other applications including financial systems. Supports data durability via snapshots and journal logging, and high availability via a hot-standby.
This template links to mirbase. This external link template is underused, compared to the number of links to the resource it represents. Please help convert those links to make use of this template, for ease of tracking, and ease of interoperability with Wikidata .
Many mammalian genomes encode four closely related miR-29 precursors that are transcribed in two transcriptional units. For example, human miR-29a and miR-29b-1 are processed from an intron of a long non-coding transcript pri-miRNA (lnc-pri-miRNA) LOC646329 from chromosome 7. miR-29b-2 (identical in sequence to miR-29b-1) and miR-29c are co-transcribed from chromosome 1.
miRBase is considered to be the gold-standard miRNA database—it stores miRNA sequences detected by thousand of experiments. In this database each miRNA is associated with a miRNA precursor and with one or two mature miRNA (-5p and -3p). In the past it had always been said that the same miRNA precursor generates the same miRNA sequences.
An open file format is a file format for storing digital data, defined by a published specification usually maintained by a standards organization, and which can be used and implemented by anyone. For example, an open format can be implemented by both proprietary and free and open source software , using the typical software licenses used by each.