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2. PathVisio - Wikipedia

   en.wikipedia.org/wiki/PathVisio

   PathVisio is a free open-source pathway analysis and drawing software. It allows drawing, editing, and analyzing biological pathways.Visualization of ones experimental data on the pathways for finding relevant pathways that are over-represented in your data set is possible.

3. Reactome - Wikipedia

   en.wikipedia.org/wiki/Reactome

   Reactome also has a ReactomeGSA [6] tool, integrated into the Reactome Analysis Tools that allows comparative pathway analyses of multi-omics datasets, with compatibility with single-cell RNA-seq data. Public data from EBI Expression Atlas, Single Cell Expression Atlas, and NCBI GREIN GEO data can be integrated into the analysis.

4. List of free electronics circuit simulators - Wikipedia

   en.wikipedia.org/wiki/List_of_free_electronics...

   List of free analog and digital electronic circuit simulators, available for Windows, macOS, Linux, and comparing against UC Berkeley SPICE.The following table is split into two groups based on whether it has a graphical visual interface or not.

5. Pathway analysis - Wikipedia

   en.wikipedia.org/wiki/Pathway_analysis

   Pathway resources and types of pathway analysis using databases like KEGG, Reactome and WikiPathways. [1]Pathway is the term from molecular biology for a curated schematic representation of a well characterized segment of the molecular physiological machinery, such as a metabolic pathway describing an enzymatic process within a cell or tissue or a signaling pathway model representing a ...

6. List of protein subcellular localization prediction tools

   en.wikipedia.org/wiki/List_of_protein_sub...

   The University of Minnesota Pathway Prediction System (UM-PPS) is a web tool that recognizes functional groups in organic compounds that are potential targets of microbial catabolic reactions and predicts transformations of these groups based on biotransformation rules. Multi-level predictions are made. (bio.tools entry) [116]

7. List of free geology software - Wikipedia

   en.wikipedia.org/wiki/List_of_free_geology_software

   This is a list of free and open-source software for geological data handling and interpretation. The list is split into broad categories, depending on the intended use of the software and its scope of functionality. Notice that 'free and open-source' requires that the source code is available and users are given a free software license.

8. List of open-source bioinformatics software - Wikipedia

   en.wikipedia.org/wiki/List_of_open-source...

   Academic Free: Collaborative project GenePattern: Scientific workflow system that provides access to hundreds of genomic analysis tools Unix-like (public server); Linux, macOS, Windows: MIT: Broad Institute, UC San Diego: Geworkbench: Genomic data integration platform Linux, macOS, Windows: GeWorkbench License [5] Columbia University: GMOD

9. List of RNA-Seq bioinformatics tools - Wikipedia

   en.wikipedia.org/wiki/List_of_RNA-Seq...

   FunRichFunctional Enrichment analysis tool. GAGE is applicable independent of sample sizes, experimental design, assay platforms, and other types of heterogeneity. [148] This Biocondutor package also provides functions and data for pathway, GO and gene set analysis in general.