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  2. List of phylogenetic tree visualization software - Wikipedia

    en.wikipedia.org/wiki/List_of_phylogenetic_tree...

    Automatic customization and visualization of phylogenetic trees iTOL - interactive Tree Of Life [6] annotate trees with various types of data and export to various graphical formats; scriptable through a batch interface Microreact [7] Link, visualise and explore sequence and meta-data using phylogenetic trees, maps and timelines OneZoom [8]

  3. List of phylogenetics software - Wikipedia

    en.wikipedia.org/wiki/List_of_phylogenetics_software

    MNHN-Tree-Tools: MNHN-Tree-Tools is an opensource phylogenetics inference software working on nucleic and protein sequences. Clustering of DNA or protein sequences and phylogenetic tree inference from a set of sequences. At the core it employs a distance-density based approach. Thomas Haschka, Loïc Ponger, Christophe Escudé and Julien ...

  4. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Tool to design and execute workflows Linux, macOS, Windows: LGPL: myGrid: T-REX (web server) Inference, validation and visualization of phylogenetic trees and phylogenetic networks Web browser, Windows: GNU (GPL) v3 Université du Québec à Montréal [7] UGENE: Integrated bioinformatics tools, written in C++ Linux, macOS, Windows: GPL 2 Unipro ...

  5. Biological data visualization - Wikipedia

    en.wikipedia.org/wiki/Biological_data_visualization

    A phylogenetic tree is a branching diagram or a tree showing the evolutionary relationships among various biological species or other entities based upon similarities and differences in their physical or genetic characteristics. It is a visual representation that shows the evolutionary history between a set of species or taxa during a specific ...

  6. ARB Project - Wikipedia

    en.wikipedia.org/wiki/ARB_Project

    A phylogenetic tree visualized in the main window can be used for data access and visualization. The package contains additional tools for data import and export, sequence alignment, primary and secondary structure editing, profile and filter calculation, phylogenetic analyses, specific hybridization probe design and evaluation, and other ...

  7. Archaeopteryx (software) - Wikipedia

    en.wikipedia.org/wiki/Archaeopteryx_(software)

    Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees.This type of program can be used for a variety of analyses of molecular data sets, but is particularly designed for phylogenomics.

  8. Dendroscope - Wikipedia

    en.wikipedia.org/wiki/Dendroscope

    Dendroscope is an interactive computer software program written in Java for viewing Phylogenetic trees. [1] This program is designed to view trees of all sizes and is very useful for creating figures.

  9. List of alignment visualization software - Wikipedia

    en.wikipedia.org/wiki/List_of_alignment...

    Tree calculation tool calculates phylogenetic tree using BioJava API and lets user draw trees using Archaeopteryx: Software is package of 7 interactive visual tools for multiple sequence alignments. Major focus is manipulating large alignments. Includes MSApad, MSA comparator, MSA reconstruction tool, FASTA generator and MSA ID matrix calculator