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Valence shell electron pair repulsion (VSEPR) theory (/ ˈ v ɛ s p ər, v ə ˈ s ɛ p ər / VESP-ər, [1]: 410 və-SEP-ər [2]) is a model used in chemistry to predict the geometry of individual molecules from the number of electron pairs surrounding their central atoms. [3]
Constituent amino-acids can be analyzed to predict secondary, tertiary and quaternary protein structure. This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading, ab initio methods, secondary structure prediction, and transmembrane helix and signal peptide prediction.
The following exergonic equilibrium gives rise to the triiodide ion: . I 2 + I − ⇌ I − 3. In this reaction, iodide is viewed as a Lewis base, and the iodine is a Lewis acid.The process is analogous to the reaction of S 8 with sodium sulfide (which forms polysulfides) except that the higher polyiodides have branched structures.
predict both 3-state and 8-state secondary structure using conditional neural fields from PSI-BLAST profiles: Webserver/downloadable: server download: 2011 GOR: Information theory/Bayesian inference: Many implementations: Basic GOR GOR V: 2002 (GOR V) Jpred: Multiple Neural network assignment from PSI-BLAST and HMMER profiles. Predicts ...
Protein Prospector is a package of about twenty proteomic analysis tools developed at the University of California San Francisco. The tandem mass spectrometry searching software is Batch-Tag and Batch-Tag Web, with the results processed and displayed using Search Compare. RAId Lost
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Protein structure alignment and visualization of structural similarities; alignment of multiprotein complexes: Cα: Pair: No: server download: M. Sippl & M. Wiederstein: 2012 SSGS Secondary Structure Guided Superimposition: Ca: Pair: No: site: G. Wainreb et al. 2006 Matchprot Comparison of protein structures by growing neighborhood alignments ...
The CME FedWatch Tool, which measures market expectations for Fed fund rate changes, projects a 74% chance the Fed will cut rates by a quarter percentage point to a range of 4.25% to 4.50% at its ...