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GUI/Scripting tool [7] for building and simulating multicellular models. multiplatform (C++/Python) MIT: Yes, but only for reactions. COPASI: GUI tool [8] [9] for analyzing and simulating SBML models. multiplatform (C++) Artistic License: Yes Cytosim: Spatial simulator for flexible cytoskeletal filaments and motor proteins [10] Mac, Linux ...
AnyLogic - a multi-method simulation modeling tool for business and science. Developed by The AnyLogic Company. APMonitor - a tool for dynamic simulation, validation, and optimization of multi-domain systems with interfaces to Python and MATLAB. Arena - a flowchart-based discrete event simulation software developed by Rockwell Automation
In 2008, the stack-based simulation language SLI was superseded by a modern Python interface, however, the old simulation language is still used internally. [8] At the same time, the simulator independent specification language PyNN was developed with support for NEST. [ 9 ]
The Biopython project is an open-source collection of non-commercial Python tools for computational biology and bioinformatics, created by an international association of developers. [ 1 ] [ 4 ] [ 5 ] It contains classes to represent biological sequences and sequence annotations , and it is able to read and write to a variety of file formats.
The World3 model is a system dynamics model for computer simulation of interactions between population, industrial growth, food production and limits in the ecosystems of the earth. It was originally produced and used by a Club of Rome study that produced the model and the book The Limits to Growth (1972).
Microsimulation is the use of computerized analytical tools to perform analysis of activities such as highway traffic flowing through an intersection, financial transactions, or pathogens spreading disease through a population on the granularity level of individuals. Synonyms include microanalytic simulation [1] and microscopic simulation. [2]
The latter can be used for simulation of disease transmission, [3] traffic [4] and similar. Synthetic population are initial sets of agents with detailed demographic and socioeconomic attributes, which allow execution of agent-based microsimulation. [5] Due to privacy reasons and data limitations and restrict observability of entire real ...
Brian is written in Python. Computationally, it is based around the concept of code generation: users specify the model in Python but behind the scenes Brian generates, compiles and runs code in one of several languages (including Python, Cython and C++ ).