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The Variant Call Format or VCF is a standard text file format used in bioinformatics for storing gene sequence or DNA sequence variations. The format was developed in 2010 for the 1000 Genomes Project and has since been used by other large-scale genotyping and DNA sequencing projects.
File conversion from VCF file is handled within the function call, followed by annotation and output to an Excel-compatible file. The script takes a number of parameters for annotation and outputs a VCF file with the annotations as key-value pairs inside of the INFO column of the VCF file for each genetic variant, e.g. "genomic_function=exonic".
The BED (Browser Extensible Data) format is a text file format used to store genomic regions as coordinates and associated annotations. The data are presented in the form of columns separated by spaces or tabs. This format was developed during the Human Genome Project [1] and then adopted by other sequencing projects.
jCard, "The JSON Format for vCard" is a standard proposal of 2014 in RFC 7095.RFC 7095 describes a lossless method of representing vCard instances in JSON, using arrays of sequence-dependent tag–value pairs. jCard has been incorporated into several other protocols, including RDAP, the Protocol to Access White Space Databases (PAWS, described in RFC 7545), and SIP, which (via RFC 8688) uses ...
S-MART handles mapped RNA-Seq data, and performs essentially data manipulation (selection/exclusion of reads, clustering and differential expression analysis) and visualization (read information, distribution, comparison with epigenomic ChIP-Seq data). It can be run on any laptop by a person without computer background.
Import and export your personal data to a file for safekeeping. Personal data includes Mail, Favorites, Address Book, and settings. 1. Sign in to Desktop Gold. 2. Click the Settings icon. 3. While in the General settings, click the My Data tab. 4. Click Import or Export. 5. Select your file. 6. If exporting, create a password.
This page is a subsection of the list of sequence alignment software.. Multiple alignment visualization tools typically serve four purposes: Aid general understanding of large-scale DNA or protein alignments
vCard, a file format standard for electronic business cards Virtual Case File , a software application developed by the United States Federal Bureau of Investigation VMware Cloud Foundation, an infrastructure platform for hybrid cloud management of the VMware Infrastructure product line