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The results of hierarchical clustering [1] are usually presented in a dendrogram. Hierarchical clustering has the distinct advantage that any valid measure of distance can be used. In fact, the observations themselves are not required: all that is used is a matrix of distances .
Cluster analysis or clustering is the task of grouping a set of objects in such a way that objects in the same group (called a cluster) are more similar (in some specific sense defined by the analyst) to each other than to those in other groups (clusters). It is a main task of exploratory data analysis, and a common technique for statistical ...
The Calinski–Harabasz index (CHI), also known as the Variance Ratio Criterion (VRC), is a metric for evaluating clustering algorithms, introduced by Tadeusz CaliĆski and Jerzy Harabasz in 1974. [1] It is an internal evaluation metric, where the assessment of the clustering quality is based solely on the dataset and the clustering results ...
In statistics, Ward's method is a criterion applied in hierarchical cluster analysis. Ward's minimum variance method is a special case of the objective function approach originally presented by Joe H. Ward, Jr. [1] Ward suggested a general agglomerative hierarchical clustering procedure, where the criterion for choosing the pair of clusters to ...
K-means clustering algorithm and some of its variants (including k-medoids) have been shown to produce good results for gene expression data (at least better than hierarchical clustering methods). Empirical comparisons of k-means, k-medoids, hierarchical methods and, different distance measures can be found in the literature. [18] [19]
Automatic clustering algorithms. Automatic clustering algorithms are algorithms that can perform clustering without prior knowledge of data sets. In contrast with other cluster analysis techniques, automatic clustering algorithms can determine the optimal number of clusters even in the presence of noise and outlier points. [1][needs context]
The nearest-neighbor chain algorithm constructs a clustering in time proportional to the square of the number of points to be clustered. This is also proportional to the size of its input, when the input is provided in the form of an explicit distance matrix. The algorithm uses an amount of memory proportional to the number of points, when it ...
Fowlkes–Mallows index. The Fowlkes–Mallows index is an external evaluation method that is used to determine the similarity between two clusterings (clusters obtained after a clustering algorithm), and also a metric to measure confusion matrices. This measure of similarity could be either between two hierarchical clusterings or a clustering ...