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The look-and-say sequence is also popularly known as the Morris Number Sequence, after cryptographer Robert Morris, and the puzzle "What is the next number in the sequence 1, 11, 21, 1211, 111221?" is sometimes referred to as the Cuckoo's Egg , from a description of Morris in Clifford Stoll 's book The Cuckoo's Egg .
The output is the predicted peptide sequences in the FASTA format, and a definition line that includes the query ID, the translation reading frame and the nucleotide positions where the coding region begins and ends. OrfPredictor facilitates the annotation of EST-derived sequences, particularly, for large-scale EST projects.
An open reading frame (ORF) is a reading frame that has the potential to be transcribed into RNA and translated into protein. It requires a continuous sequence of DNA which may include a start codon, through a subsequent region which has a length that is a multiple of 3 nucleotides, to a stop codon in the same reading frame.
For example, in a typical gene a start codon (5′-ATG-3′) is a DNA sequence within the sense strand. Transcription begins at an upstream site (relative to the sense strand), and as it proceeds through the region it copies the 3′-TAC-5′ from the template strand to produce 5′-AUG-3′ within a messenger RNA (mRNA).
The most common sequencing method is the shotgun method, which is the method most probably used on sequence 2. Once a method is decided on, you have to specify the length of the bp reads you would like it to return. In the case of sequence 2, it returned 7-bp reads with all errors made during the process noted in red. [4]
The maximum number of pieces, p obtainable with n straight cuts is the n-th triangular number plus one, forming the lazy caterer's sequence (OEIS A000124) One way of calculating the depreciation of an asset is the sum-of-years' digits method, which involves finding T n, where n is the length in years of the asset's useful life.