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  2. Mascot (software) - Wikipedia

    en.wikipedia.org/wiki/Mascot_(software)

    Peptide Mass Fingerprint search Identifies proteins from an uploaded peak list using a technique known as peptide mass fingerprinting. Sequence query Combines peptide mass data with amino acid sequence and composition information usually obtained from MS/MS tandem mass spectrometry data. Based on the peptide sequence tag approach. MS/MS Ion Search

  3. Ramachandran plot - Wikipedia

    en.wikipedia.org/wiki/Ramachandran_plot

    The ω angle at the peptide bond is normally 180°, since the partial-double-bond character keeps the peptide bond planar. [3] The figure in the top right shows the allowed φ,ψ backbone conformational regions from the Ramachandran et al. 1963 and 1968 hard-sphere calculations: full radius in solid outline, reduced radius in dashed, and ...

  4. Protein pKa calculations - Wikipedia

    en.wikipedia.org/wiki/Protein_pKa_calculations

    In computational biology, protein pK a calculations are used to estimate the pK a values of amino acids as they exist within proteins.These calculations complement the pK a values reported for amino acids in their free state, and are used frequently within the fields of molecular modeling, structural bioinformatics, and computational biology.

  5. Singular point of a curve - Wikipedia

    en.wikipedia.org/wiki/Singular_point_of_a_curve

    Hence, it is technically more correct to discuss singular points of a smooth mapping here rather than a singular point of a curve. The above definitions can be extended to cover implicit curves which are defined as the zero set ⁠ f − 1 ( 0 ) {\displaystyle f^{-1}(0)} ⁠ of a smooth function , and it is not necessary just to consider ...

  6. Regular singular point - Wikipedia

    en.wikipedia.org/wiki/Regular_singular_point

    Point a is an ordinary point when functions p 1 (x) and p 0 (x) are analytic at x = a. Point a is a regular singular point if p 1 (x) has a pole up to order 1 at x = a and p 0 has a pole of order up to 2 at x = a. Otherwise point a is an irregular singular point.

  7. Protein structure prediction - Wikipedia

    en.wikipedia.org/wiki/Protein_structure_prediction

    An alpha-helix with hydrogen bonds (yellow dots) The α-helix is the most abundant type of secondary structure in proteins. The α-helix has 3.6 amino acids per turn with an H-bond formed between every fourth residue; the average length is 10 amino acids (3 turns) or 10 Å but varies from 5 to 40 (1.5 to 11 turns).

  8. Protein sequencing - Wikipedia

    en.wikipedia.org/wiki/Protein_sequencing

    Protein sequence interpretation: a scheme new protein to be engineered in a yeast. It is often desirable to know the unordered amino acid composition of a protein prior to attempting to find the ordered sequence, as this knowledge can be used to facilitate the discovery of errors in the sequencing process or to distinguish between ambiguous results.

  9. Resolution of singularities - Wikipedia

    en.wikipedia.org/wiki/Resolution_of_singularities

    Repeatedly blowing up the singular points of a curve will eventually resolve the singularities. The main task with this method is to find a way to measure the complexity of a singularity and to show that blowing up improves this measure. There are many ways to do this. For example, one can use the arithmetic genus of the curve.