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Global access to the data is provided by the websites of the wwPDB member organisations (PDBe, [3] PDBj, [4] RCSB PDB, [5] and BMRB [6]). The PDB is a key in areas of structural biology, such as structural genomics. Most major scientific journals and some funding agencies now require scientists to submit their structure data to the PDB.
Protein Data Bank: Protein DataBank in Europe (PDBe), [18] ProteinDatabank in Japan (PDBj), [19] Research Collaboratory for Structural Bioinformatics (RCSB) [20] (PDB) Protein structure databases Structural Classification of Proteins (SCOP) Protein structure databases CATH database: Protein structure databases ModBase: Sali Lab, UCSF
The RCSB PDB presently acts as the "archive keeper". This ensures that there is only one version of the data which is identical for all users. The modified database is then made available to the other wwPDB members, each of whom makes the resulting structure files available through their websites to the public.
The PDB file format was invented in 1972 [2] [3] as a human-readable file that would allow researchers to exchange the atomic coordinates in a given protein through a database system. Its fixed-column width format is limited to 80 or 140 [ 4 ] columns, which was based on the width of the computer punch cards that were previously used to ...
The Protein Data Bank (PDB) was established in 1971 as the central archive of all experimentally determined protein structure data. Today the PDB is maintained by an international consortia collectively known as the Worldwide Protein Data Bank (wwPDB). The mission of the wwPDB is to maintain a single archive of macromolecular structural data ...
3-dimensional multiple sequence alignment, produced on the 1D-3D Group Alignment Viewer, by RCSB Protein Data Bank. 3D visualization – A common, one-dimensional, representation of a protein sequence is a list of the amino acids that form it. However, 3-dimensional alignment displays the way sequences may match each other.
The original version of the database was developed around 1995 by Roman Laskowski and collaborators at University College London. [5] As of 2014, PDBsum is maintained by Laskowski and collaborators in the laboratory of Janet Thornton at the European Bioinformatics Institute (EBI).
228994 Ensembl ENSG00000149658 ENSMUSG00000038848 UniProt Q9BYJ9 P59326 RefSeq (mRNA) NM_017798 NM_173761 RefSeq (protein) NP_060268 NP_776122 Location (UCSC) Chr 20: 63.2 – 63.22 Mb Chr 2: 180.55 – 180.56 Mb PubMed search Wikidata View/Edit Human View/Edit Mouse YTH domain family, member 1 is a protein that in humans is encoded by the YTHDF1 gene. See also N 6 -Methyladenosine References ...