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RefSeq Functional Elements (RefSeqFE): It is focused on describing non-genic functional elements which are gene regulatory regions such as: enhancers, silencers, DNase I hypersensitive regions, DNA replication origins etc.). The current scope of this project is restricted to the human and mouse genomes.
SQL*Module is a module language that offers a different programming method from embedded SQL. SQL*Module supports the Ada83 language standard for Ada. C/C++ Pro*C became Pro*C/C++ with Oracle8. Pro*C/C++ is currently supported as of Oracle Database 11g. COBOL Pro*COBOL is currently supported as of Oracle Database 11g. Fortran
IBM VisualAge Java is an example of an integrated development environment implementing SCID features. A more recent example of Source Code in Database is CodeOntology, an open source tool and RDF database of Java source code that supports advanced SPARQL queries, such as Select recursive methods or Select methods that compute the cube root of a double.
Twill: Use Apache Hadoop YARN's distributed capabilities with a programming model that is similar to running threads; Usergrid: an open-source Backend-as-a-Service ("BaaS" or "mBaaS") composed of an integrated distributed NoSQL database, application layer and client tier with SDKs for developers looking to rapidly build web and/or mobile ...
In computer software, a general-purpose programming language (GPL) is a programming language for building software in a wide variety of application domains. Conversely, a domain-specific programming language (DSL) is used within a specific area. For example, Python is a GPL, while SQL is a DSL for querying relational databases.
Standard examples of data-driven languages are the text-processing languages sed and AWK, [1] and the document transformation language XSLT, where the data is a sequence of lines in an input stream – these are thus also known as line-oriented languages – and pattern matching is primarily done via regular expressions or line numbers.
Slider is an application for the Illumina Sequence Analyzer output that uses the "probability" files instead of the sequence files as an input for alignment to a reference sequence or a set of reference sequences. Yes Yes No No [53] [54] 2009-2010 SOAP, SOAP2, SOAP3, SOAP3-dp SOAP: robust with a small (1-3) number of gaps and mismatches.
fastqp Simple FASTQ quality assessment using Python. Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run.