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2. List of sequence alignment software - Wikipedia

   en.wikipedia.org/wiki/List_of_sequence_alignment...

   Software for ultra fast local DNA sequence motif search and pairwise alignment for NGS data (FASTA, FASTQ). DNA: Hepperle D (www.sequentix.de) 2020 Genoogle Genoogle uses indexing and parallel processing techniques for searching DNA and Proteins sequences. It is developed in Java and open source. Both: Albrecht F: 2015 HMMER

3. List of open-source bioinformatics software - Wikipedia

   en.wikipedia.org/wiki/List_of_open-source...

   A comprehensive list of computer software for bioinformatics and genomic analysis, released under open-source licenses and with Wikipedia articles. The list covers various platforms, languages, licenses, and applications, such as BLAST, Bioconductor, Galaxy, and SOAP.

4. Sequence analysis - Wikipedia

   en.wikipedia.org/wiki/Sequence_analysis

   Learn about the process and tools of sequence analysis in bioinformatics, which involves comparing and interpreting DNA, RNA or peptide sequences to understand their features, function, structure, or evolution. Explore the history, overview, and examples of sequence analysis for nucleotide and protein sequences.

5. PHYLIP - Wikipedia

   en.wikipedia.org/wiki/PHYLIP

   PHYLIP is a collection of 65 programs for inferring evolutionary trees from various data types and methods. It was developed by Joseph Felsenstein and is available as open-source software for Windows, Mac OS X, Linux and FreeBSD.

6. Bowtie (sequence analysis) - Wikipedia

   en.wikipedia.org/wiki/Bowtie_(sequence_analysis)

   Bowtie is a software package commonly used for sequence alignment and sequence analysis in bioinformatics. [3] The source code for the package is distributed freely and compiled binaries are available for Linux, macOS and Windows platforms. As of 2017, the Genome Biology paper describing the original Bowtie method has been cited more than ...

7. List of phylogenetics software - Wikipedia

   en.wikipedia.org/wiki/List_of_phylogenetics_software

   MNHN-Tree-Tools is an opensource phylogenetics inference software working on nucleic and protein sequences. Clustering of DNA or protein sequences and phylogenetic tree inference from a set of sequences. At the core it employs a distance-density based approach. Thomas Haschka, Loïc Ponger, Christophe Escudé and Julien Mozziconacci [24 ...