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This is a list of software systems that are used for visualizing microscopy data. For each software system, the table below indicates which type of data can be displayed: EM = Electron microscopy ; MG = Molecular graphics ; Optical = Optical microscopy .
IMOD includes over 180 command line programs listed here and three main GUI programs: . 3dmod - IMOD's main GUI used to view and segment images and 3D vector models.; Midas - A program used to align images over the top of each other, typically to apply fine adjustments after automatic cross-correlation.
3-dimensional multiple sequence alignment, produced on the 1D-3D Group Alignment Viewer, by RCSB Protein Data Bank. 3D visualization – A common, one-dimensional, representation of a protein sequence is a list of the amino acids that form it. However, 3-dimensional alignment displays the way sequences may match each other.
Amira (ah-MEER-ah) is a software platform for visualization, processing, and analysis of 3D and 4D data. It is being actively developed by Thermo Fisher Scientific in collaboration with the Zuse Institute Berlin (ZIB), and commercially distributed by Thermo Fisher Scientific — together with its sister software Avizo.
This opens up the future possibility of 3-dimensional live-cell imaging by means of fluorescence techniques. [22] Quantitative phase-contrast microscopy with rotational scanning allow 3D time-lapse images of living cells to be acquired at high resolution. [23] [24] [4]
Lattice light-sheet microscopy is a modified version of light sheet fluorescence microscopy that increases image acquisition speed while decreasing damage to cells caused by phototoxicity. This is achieved by using a structured light sheet to excite fluorescence in successive planes of a specimen, generating a time series of 3D images which can ...
Following is a list of notable 3D modeling software, computer programs used for developing a mathematical representation of any Three Dimensional surface of objects, also called 3D modeling. Title License
Microscope image processing is a broad term that covers the use of digital image processing techniques to process, analyze and present images obtained from a microscope. Such processing is now commonplace in a number of diverse fields such as medicine, biological research, cancer research, drug testing, metallurgy, etc. A number of ...