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  2. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    A workflow management system used for building and running scalable and reproducible bioinformatics pipelines, especially in cloud and high-performance computing environments. Linux, macOS, Windows: Apache License 2.0 Nextflow Team [6] PathVisio: Desktop software for drawing, analyzing, and visualizing biological pathways Linux, macOS, Windows ...

  3. List of Unified Modeling Language tools - Wikipedia

    en.wikipedia.org/wiki/List_of_Unified_Modeling...

    UML Designer: Yes Yes Yes Un­known Any kind of languages as it is compatible with code generator tools like Eclipse UMLGenerators or Acceleo Any kind of languages supported by Eclipse UML Generators Eclipse Open source under EPL license, based on Eclipse, EMF, Sirius UMLet: No No No No No Java Eclipse, Visual Studio Code

  4. List of systems biology modeling software - Wikipedia

    en.wikipedia.org/wiki/List_of_systems_biology...

    System boundaries codes: R = reflecting, A = absorbing, T = transmitting, P = periodic, and I = interacting. * Algorithm is exact but software produced incorrect results at the time of original table compilation. † These benchmark run times are not comparable with others due to differing levels of detail.

  5. PlantUML - Wikipedia

    en.wikipedia.org/wiki/PlantUML

    PlantUML is an open-source tool allowing users to create diagrams from a plain text language. Besides various UML diagrams, PlantUML has support for various other software development related formats (such as Archimate, Block diagram, BPMN, C4, Computer network diagram, ERD, Gantt chart, Mind map, and WBD), as well as visualisation of JSON and YAML files.

  6. List of SysML tools - Wikipedia

    en.wikipedia.org/wiki/List_of_SysML_tools

    UML v1 Yes [47] Un­known Yes [48] Un­known Software Ideas Modeler: Yes Yes Un­known Yes Yes No Un­known System Architect: Yes Yes Un­known No Yes Yes DOORS, RTC, UNICOM Focal Point, Rhapsody System Architecture Modeler: Yes SysML v2 No Yes No No DOORS,Codebeamer, Ansys medini, Ansys Scade One, Ansys ModelCenter UModel: Yes Partial Un ...

  7. Pathway analysis - Wikipedia

    en.wikipedia.org/wiki/Pathway_analysis

    Pathway resources and types of pathway analysis using databases like KEGG, Reactome and WikiPathways. [1]Pathway is the term from molecular biology for a curated schematic representation of a well characterized segment of the molecular physiological machinery, such as a metabolic pathway describing an enzymatic process within a cell or tissue or a signaling pathway model representing a ...

  8. Rhapsody (modeling) - Wikipedia

    en.wikipedia.org/wiki/Rhapsody_(modeling)

    Rhapsody was first released in 1996 by Israeli software company I-Logix Inc. [5] Rhapsody was developed as an object-oriented tool for modeling and executing statecharts, based on work done by David Harel at the Weizmann Institute of Science, who was the first to develop the concept of hierarchical, parallel, and broadcasting statecharts.

  9. UML tool - Wikipedia

    en.wikipedia.org/wiki/UML_tool

    Diagram data is normally not contained with the program source, such that the UML tool, at least in the initial step, has to create some random layout of the graphical symbols of the UML notation or use some automatic layout algorithm to place the symbols in a way that the user can understand the diagram. For example, the symbols should be ...

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