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UGENE integrates dozens of well-known biological tools, algorithms, and original tools in the context of genomics, evolutionary biology, virology, and other branches of life science. UGENE provides a graphical user interface (GUI) for the pre-built tools so biologists with no computer programming skills can access those tools more easily.
UGENE: Integrated bioinformatics tools, written in C++ Linux, macOS, Windows: GPL 2 Unipro Unipept: Metaproteomics biodiversity analysis written in Ruby and JavaScript Web browser: MIT: Ghent University: VOTCA: A Coarse-grained modeling package for molecular dynamics, written in C++, Perl, BASH Linux, macOS, Windows, any other Unix variety ...
Name Description OS 1 Citation ARB An integrated software environment for tree visualisation and annotation: LM [19]Archaeopteryx: Java tree viewer and editor (used to be ATV)
UGENE: Fast and free multiplatform tree editor: GUI with PHYLIP 3.6 and IQTree algorithms: Unipro VeryFastTree [51] A highly-tuned tool that uses parallelizing and vectorizing strategies to speed inference of phylogenies for huge alignments Approximate maximum likelihood César Piñeiro. José M. Abuín and Juan C. Pichel Winclada
Free, GPL2 ALLALIGN For DNA, RNA and protein molecules up to 32MB, aligns all sequences of size K or greater, MSA or within a single molecule. Similar alignments are grouped together for analysis. Automatic repetitive sequence filter. Both Local E. Wachtel 2017 Free AMAP: Sequence annealing: Both: Global: A. Schwartz and L. Pachter: 2006: BAli-Phy
The architects designing UniPro intended from the start to release the technology as a step-wise roadmap with backward compatibility. UniPro 1.1 is designed to be fully backwards compatible with UniPro 1.0. The main purpose of UniPro 1.40 and UniPro v1.41 (UniPro v1.4x) is to support an additional physical layer, the M-PHY.
UniProt is a freely accessible database of protein sequence and functional information, many entries being derived from genome sequencing projects.It contains a large amount of information about the biological function of proteins derived from the research literature.
Unipro (АО Юнипро, former names: E.ON Russia, The Fourth Generation Company of the Wholesale Electricity Market or OGK-4) is a Russian power generation company formed by merger of five generation companies. 83.73% of the company is owned by the German energy company Uniper, the rest of the shares are owned by minority shareholders. [3]