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Bacterial taxonomy is the classification of strains within the domain Bacteria into hierarchies of similarity. This classification is similar to that of plants , mammals , and other taxonomies. However, biologists specializing in different areas have developed differing taxonomic conventions over time.
Bergey's Manual Trust was established in 1936 to sustain the publication of Bergey's Manual of Determinative Bacteriology and supplementary reference works. The Trust also recognizes individuals who have made outstanding contributions to bacterial taxonomy by presentation of the Bergey Award and Bergey Medal, jointly supported by funds from the Trust and from Springer, the publishers of the ...
This article lists the orders of the Bacteria.The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [1] and National Center for Biotechnology Information (NCBI) [2] and the phylogeny is based on 16S rRNA-based LTP release 132 by The All-Species Living Tree Project.
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, [1] following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes. [2] The database was curated from 1997 to June 2013 by Jean P. Euzéby. [3]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [1] and National Center for Biotechnology Information (NCBI). [2] However many taxonomic names are taken from the GTDB release 08-RS214 (28 April 2023).
There are several models of the branching order of bacterial phyla, one of these is the Genome Taxonomy Database (GTDB).. The GTDB is an initiative to establish a standardised microbial taxonomy based on genome phylogeny, primarily funded by an Australian Research Council Laureate Fellowship.
Bacteriology is the branch and specialty of biology that studies the morphology, ecology, genetics and biochemistry of bacteria as well as many other aspects related to them. This subdivision of microbiology involves the identification, classification, and characterization of bacterial species. [1]
Each update incorporates new genomes as well as automated and manual curation of the taxonomy. [4] An open-source tool called GTDB-Tk is available to classify draft genomes into the GTDB hierarchy. [5] The GTDB system, via GTDB-Tk, has been used to catalogue not-yet-named bacteria in the human gut microbiome and other metagenomic sources. [6] [7]