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  2. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Centralized web application that provides data format transformations and facilitates connections with other bioinformatics tools Web browser: LGPL: Broad Institute, collaborative project GENtle: An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files Linux, macOS, Windows: GPL: Magnus Manske: gget

  3. Arlequin (software) - Wikipedia

    en.wikipedia.org/wiki/Arlequin_(software)

    Arlequin is a free population genetics software distributed as an integrated GUI data analysis software. [1] It performs several types of tests and calculations, including Fixation index (F st, also known as the "F-statistics" [2]), computing genetic distance, Hardy–Weinberg equilibrium, linkage disequilibrium, analysis of molecular variance, mismatch distribution, and pairwise difference tests.

  4. Molecular Evolutionary Genetics Analysis - Wikipedia

    en.wikipedia.org/wiki/Molecular_Evolutionary...

    Molecular Evolutionary Genetics Analysis (MEGA) is computer software for conducting statistical analysis of molecular evolution and for constructing phylogenetic trees. It includes many sophisticated methods and tools for phylogenomics and phylomedicine. It is licensed as proprietary freeware.

  5. Galaxy (computational biology) - Wikipedia

    en.wikipedia.org/wiki/Galaxy_(computational_biology)

    As a free public web server, [18] supported by the Galaxy Project. [19] This server includes many bioinformatics tools that are widely useful in many areas of genomics research. Users can create logins, and save histories, workflows, and datasets on the server. These saved items can also be shared with others.

  6. Phylogenetic Assignment of Named Global Outbreak Lineages

    en.wikipedia.org/wiki/Phylogenetic_Assignment_of...

    Distinct from the PANGOLIN tool, Pango lineages are regularly, manually curated based on the current globally circulating diversity. A large phylogenetic tree is constructed from an alignment containing publicly available SARS-CoV-2 genomes, and sub-clusters of sequences in this tree are manually examined and cross-referenced against epidemiological information to designate new lineages; these ...

  7. Cellosaurus - Wikipedia

    en.wikipedia.org/wiki/Cellosaurus

    Other types of information include standardised disease terminology (for cancer or genetic disorder cell lines), the transformant used to immortalise a cell line, transfected or knocked-out genes, microsatellite instability, doubling time, gender and age of donor (patient or animal), important sequence variations, web links, publication ...

  8. List of genetics research organizations - Wikipedia

    en.wikipedia.org/wiki/List_of_genetics_research...

    Cold Spring Harbor Laboratory; Icahn Institute for Genomics and Multiscale Biology (Icahn School of Medicine) New York Genome Center; International Society for Transgenic Technologies; North Carolina. Metabolon, Inc; South Carolina. Clemson Center for Human Genetics; Greenwood Genetic Center; Texas. Human Genome Sequencing Center (Baylor ...

  9. List of preprint repositories - Wikipedia

    en.wikipedia.org/wiki/List_of_preprint_repositories

    A free preprint service for electrochemistry and solid state science and technology >100 2018 Center for Open Science: EdArXiv: Education: A Preprint Server For The Education Research Community >100 2019 Center for Open Science: engrXiv [12] Engineering: Open archive of engineering preprints >1,000 2016 Open Engineering Inc: ESSOAr: Earth science