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Peptides that are degenerate (shared by two or more proteins in the database) makes it difficult to unambiguously identify the protein to which they belong. Additionally, some proteome samples of vertebrates have a large number of paralogs , and alternative splicing in higher eukaryotes can result in many identical protein subsequences. [ 1 ]
Expression proteomics includes the analysis of protein expression at a larger scale. It helps identify main proteins in a particular sample, and those proteins differentially expressed in related samples—such as diseased vs. healthy tissue. If a protein is found only in a diseased sample then it can be a useful drug target or diagnostic marker.
The non-lytic system has been used to give higher protein yield and quicker expression of recombinant genes compared to baculovirus-infected cell expression. [24] Cell lines used for this system include: Sf9 , Sf21 from Spodoptera frugiperda cells, Hi-5 from Trichoplusia ni cells, and Schneider 2 cells and Schneider 3 cells from Drosophila ...
Workflow overview of a ChIP-on-chip experiment. ChIP-on-chip (also known as ChIP-chip ) is a technology that combines chromatin immunoprecipitation ('ChIP') with DNA microarray ( "chip" ). Like regular ChIP , ChIP-on-chip is used to investigate interactions between proteins and DNA in vivo .
ChIP-sequencing, also known as ChIP-seq, is a method used to analyze protein interactions with DNA. ChIP-seq combines chromatin immunoprecipitation (ChIP) with massively parallel DNA sequencing to identify the binding sites of DNA-associated proteins. It can be used to map global binding sites precisely for any protein of interest.
Western blot workflow. The western blot (sometimes called the protein immunoblot), or western blotting, is a widely used analytical technique in molecular biology and immunogenetics to detect specific proteins in a sample of tissue homogenate or extract. [1]