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Client-side Javascript SVG viewer for annotated rooted trees. Also supports phylogenetic networks. Iroki [5] Automatic customization and visualization of phylogenetic trees. iTOL - interactive Tree Of Life [6] annotate trees with various types of data and export to various graphical formats; scriptable through a batch interface. Microreact [7]
JSON (JavaScript Object Notation, pronounced / ˈdʒeɪsən / or / ˈdʒeɪˌsɒn /) is an open standard file format and data interchange format that uses human-readable text to store and transmit data objects consisting of attribute–value pairs and arrays (or other serializable values).
Clustal Omega, ClustalW2, MAFFT, MUSCLE, BioJava are integrated to construct alignment. Tree calculation tool calculates phylogenetic tree using BioJava API and lets user draw trees using Archaeopteryx. Software is package of 7 interactive visual tools for multiple sequence alignments. Major focus is manipulating large alignments.
JSON: No Smile Format Specification: Yes No Yes Partial (JSON Schema Proposal, other JSON schemas/IDLs) Partial (via JSON APIs implemented with Smile backend, on Jackson, Python) — SOAP: W3C: XML: Yes W3C Recommendations: SOAP/1.1 SOAP/1.2: Partial (Efficient XML Interchange, Binary XML, Fast Infoset, MTOM, XSD base64 data) Yes Built-in id ...
A software static analysis toolset for a variety of languages. Used primarily for safety critical applications in Nuclear and Aerospace industries. Moose: 2021-01-21 (7.0.3) Yes; MIT — C, C++ Java — .NET — Smalltalk Moose started as a software analysis platform with many tools to manipulate, assess or visualize software.
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GeoJSON [1] is an open standard format designed for representing simple geographical features, along with their non-spatial attributes.It is based on the JSON format.. The features include points (therefore addresses and locations), line strings (therefore streets, highways and boundaries), polygons (countries, provinces, tracts of land), and multi-part collections of these types.
In the view menu, the tree can be displayed in three different styles: traditional, radiation, or circle. Traditional trees have three different branch styles: rectangular, straight, or curved. The view menu also offers toggling topology scaling, changing font type and size, arranging taxa, showing/hiding various details, and a general option ...