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MNHN-Tree-Tools is an opensource phylogenetics inference software working on nucleic and protein sequences. Clustering of DNA or protein sequences and phylogenetic tree inference from a set of sequences. At the core it employs a distance-density based approach. Thomas Haschka, Loïc Ponger, Christophe Escudé and Julien Mozziconacci [28 ...
An integrated software environment for tree visualisation and annotation: LM [19] Archaeopteryx: Java tree viewer and editor (used to be ATV) [20] BioNumerics: Universal platform for the management, storage and analysis of all types of biological data, including tree and network inference of sequence data: W [21] Dendroscope
In computer science, tree traversal (also known as tree search and walking the tree) is a form of graph traversal and refers to the process of visiting (e.g. retrieving, updating, or deleting) each node in a tree data structure, exactly once. Such traversals are classified by the order in which the nodes are visited.
In computing, a threaded binary tree is a binary tree variant that facilitates traversal in a particular order. An entire binary search tree can be easily traversed in order of the main key, but given only a pointer to a node , finding the node which comes next may be slow or impossible.
A tree sort is a sort algorithm that builds a binary search tree from the elements to be sorted, and then traverses the tree so that the elements come out in sorted order. [1] Its typical use is sorting elements online : after each insertion, the set of elements seen so far is available in sorted order.
This unsorted tree has non-unique values (e.g., the value 2 existing in different nodes, not in a single node only) and is non-binary (only up to two children nodes per parent node in a binary tree). The root node at the top (with the value 2 here), has no parent as it is the highest in the tree hierarchy.
SplitsTree is a popular freeware program for inferring phylogenetic trees, phylogenetic networks, or, more generally, splits graphs, from various types of data such as a sequence alignment, a distance matrix or a set of trees.
A link/cut tree is a data structure for representing a forest, a set of rooted trees, and offers the following operations: Add a tree consisting of a single node to the forest. Given a node in one of the trees, disconnect it (and its subtree) from the tree of which it is part. Attach a node to another node as its child.