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This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: Aid general understanding of large-scale DNA or protein alignments; Visualize alignments for figures and publication; Manually edit and curate automatically generated alignments; Analysis in depth
Alignment of cDNA sequences to a genome. Nucleotide DECIPHER: Alignment of rearranged genomes using 6 frame translation: Nucleotide FLAK Fuzzy whole genome alignment and analysis: Nucleotide GMAP Alignment of cDNA sequences to a genome. Identifies splice site junctions with high accuracy. Nucleotide Splign Alignment of cDNA sequences to a genome.
This application performs multiple and pairwise sequence alignments, provides alignment editing, and generates phylogenetic trees. Maximum Likelihood (RAxML) and Neighbor-Joining DNASTAR: Mesquite Mesquite is software for evolutionary biology, designed to help biologists analyze comparative data about organisms.
It generates a library of pairwise alignments to guide the multiple sequence alignment. It can also combine multiple sequences alignments obtained previously and in the latest versions can use structural information from Protein Data Bank (PDB) files (3D-Coffee). It has advanced features to evaluate the quality of the alignments and some ...
YASS (Yet Another Similarity Searcher) [1] [2] is a free software, [3] pairwise sequence alignment software for nucleotide sequences, that is, it can search for similarities between DNA or RNA sequences. YASS accepts nucleotide sequences in either plain text or the FASTA format and the output format includes the BLAST tabular output.
a multiple alignment tool for RNA sequences using iterative alignment based on Sankoff's algorithm with sharply reduced computational time and memory. any: Yes: Yes: No: webserver [70] MXSCARNA: a multiple alignment tool for RNA sequences using progressive alignment based on pairwise structural alignment algorithm of SCARNA. any: Yes: Yes: No ...
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This list of structural comparison and alignment software is a compilation of software tools and web portals used in pairwise or multiple structural comparison and structural alignment. Structural comparison and alignment
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