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ImageJ is a Java-based image processing program developed at the National Institutes of Health and the Laboratory for Optical and Computational Instrumentation (LOCI, University of Wisconsin). [ 2 ] [ 3 ] Its first version, ImageJ 1.x, is developed in the public domain , while ImageJ2 and the related projects SciJava , ImgLib2 , and SCIFIO are ...
To this end, as one of the aforementioned Google Summer of Code projects, a script editor was added with syntax highlighting and in-place code execution. The scripting framework is included in the Fiji releases, so that advanced users can use such scripts in their common workflow.
Download QR code; Print/export Download as PDF; Printable version; ... Pre-trained workflows can be executed directly from ImageJ/Fiji using the ilastik-ImageJ plugin ...
CellProfiler interfaces with the high-performance scientific libraries NumPy and SciPy for many mathematical operations, the Open Microscopy Environment [11] Consortium’s Bio-Formats library for reading more than 100 image file formats, ImageJ for use of plugins and macros, and ilastik for pixel-based classification. [12]
Image SXM is an image analysis software specialized in scanning microscope images. It is based on the public domain software NIH Image (now ImageJ from the National Institutes of Health) and extended to handle scanning microscope images, especially of the SxM formats (SAM, SCM, SEM, SFM, SLM, SNOM, SPM, STM), hence its name.
A plugin for ImageJ using Otsu's method to do the threshold; A full explanation of Otsu's method with a working example and Java implementation; Implementation of Otsu's method in ITK; Otsu Thresholding in C# – a straightforward C# implementation with explanation; Otsu's method using MATLAB; Otsu Thresholding with scikit-image in Python
Download QR code; Print/export Download as PDF; Printable version; In other projects ... ImageJ2: ImageJ for the next generation of scientific image data. Rueden CT ...
Download QR code; Print/export ... are often followed by western blotting to assess protein abundance and can be analyzed using quantitative tools such as ImageJ. [2]