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2. List of phylogenetic tree visualization software - Wikipedia

   en.wikipedia.org/wiki/List_of_phylogenetic_tree...

   Javascript tree viewer for Beast CeCILL: ETE toolkit Tree Viewer [2] an online tool for phylogenetic tree view (newick format) that allows multiple sequence alignments to be shown together with the trees (fasta format) EvolView [3] an online tool for visualizing, annotating and managing phylogenetic trees IcyTree [4]

3. T-REX (web server) - Wikipedia

   en.wikipedia.org/wiki/T-REX_(web_server)

   T-REX (Tree and Reticulogram Reconstruction) [1] [2] is a freely available web server, developed at the department of Computer Science of the Université du Québec à Montréal, dedicated to the inference, validation and visualization of phylogenetic trees and phylogenetic networks.

4. Graphviz - Wikipedia

   en.wikipedia.org/wiki/Graphviz

   Doxygen uses Graphviz to generate diagrams, including class hierarchies, collaboration and call trees for source code. [7] FreeCAD uses Graphviz to display the dependencies between objects in documents. [8] Gephi has a Graphviz plugin. Gramps uses Graphviz to create genealogical (family tree) diagrams.

5. List of phylogenetics software - Wikipedia

   en.wikipedia.org/wiki/List_of_phylogenetics_software

   Fast ML tree reconstruction, bootstrap analysis, model selection, hypothesis testing, tree calibration, tree manipulation and visualization, computation of sitewise rates, sequence simulation, many models of evolution (DNA, protein, rRNA, mixed protein, user-definable), GUI and scripting language: Maximum likelihood, distances, and others

6. Tree structure - Wikipedia

   en.wikipedia.org/wiki/Tree_structure

   A tree structure, tree diagram, or tree model is a way of representing the hierarchical nature of a structure in a graphical form. It is named a "tree structure" because the classic representation resembles a tree , although the chart is generally upside down compared to a biological tree, with the "stem" at the top and the "leaves" at the bottom.

7. Newick format - Wikipedia

   en.wikipedia.org/wiki/Newick_format

   Tree: The full input Newick Format for a single tree Subtree: an internal node (and its descendants) or a leaf node Leaf: a node with no descendants Internal: a node and its one or more descendants BranchSet: a set of one or more Branches Branch: a tree edge and its descendant subtree. Name: the name of a node Length: the length of a tree edge.