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Biosimulation is a computer-aided mathematical simulation of biological processes and systems and thus is an integral part of systems biology. Due to the complexity of biological systems simplified models are often used, which should only be as complex as necessary.
Modelling biological systems is a significant task of systems biology and mathematical biology. [a] Computational systems biology [b] [1] aims to develop and use efficient algorithms, data structures, visualization and communication tools with the goal of computer modelling of biological systems.
How these numerical simulations are performed, is determined through a number of "Applications", which specify whether simulations will be deterministic or stochastic, and spatial or compartmental; multiple "Applications" can also specify initial concentrations, diffusion coefficients, flow rates and a variety of modeling assumptions.
Students reconstructed a chain of events in the Dr. Biology laboratory and field site, writing their own narrative for the story. Early in 2007, Ask A Biologist became one of the early content channels on iTunes U with its audio podcast of the same name. Hosted by Dr. Biology, the program was soon listed as one of five great courses by Macworld ...
The Concord Consortium's major areas of research and development are modeling and simulations, probeware, mobile computing, online learning, and assessment. The organization has created educational technology research initiatives with hundreds of biology, chemistry, Earth and space science, engineering, mathematics and physics activities and ...
PhET Interactive Simulations is part of the University of Colorado Boulder which is a member of the Association of American Universities. [10] The team changes over time and has about 16 members consisting of professors, post-doctoral students, researchers, education specialists, software engineers (sometimes contractors), educators, and administrative assistants. [11]
In a simulation, given a starting vector (list of the values of the variables), the progression of the system is calculated by solving the equations at each time-frame in small increments. In analysis, the properties of the equations are used to investigate the behavior of the system depending on the values of the parameters and variables.
Simulations were first run on the Lawrence Berkeley National Laboratory Lawrencium supercomputer to parameterize and benchmark the model against a variety of in vivo mammary gland measurements. The model was then used to test the three different mechanisms to determine which one led to simulation results that matched in vivo experiments the ...
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