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  2. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Open Bioinformatics Foundation: BioPerl: Perl language toolkit Cross-platform: Artistic, GPL: Open Bioinformatics Foundation: BioPHP: PHP language toolkit with classes for DNA and protein sequence analysis, alignment, database parsing, and other bioinformatics tools Cross-platform: GPL v2 Open Bioinformatics Foundation: Biopython: Python ...

  3. List of bioinformatics software - Wikipedia

    en.wikipedia.org/.../List_of_bioinformatics_software

    The list of bioinformatics software tools can be split up according to the license used: List of proprietary bioinformatics software; List of open-source bioinformatics software; Alternatively, here is a categorization according to the respective bioinformatics subfield specialized on: Sequence analysis software. List of sequence alignment software

  4. Biopython - Wikipedia

    en.wikipedia.org/wiki/Biopython

    The Biopython project is an open-source collection of non-commercial Python tools for computational biology and bioinformatics, created by an international association of developers. [1] [4] [5] It contains classes to represent biological sequences and sequence annotations, and it is able to read and write to a variety of file formats.

  5. UGENE - Wikipedia

    en.wikipedia.org/wiki/UGENE

    UGENE is computer software for bioinformatics. [1] [2] It works on personal computer operating systems such as Windows, macOS, or Linux.It is released as free and open-source software, under a GNU General Public License (GPL) version 2.

  6. List of gene prediction software - Wikipedia

    en.wikipedia.org/wiki/List_of_gene_prediction...

    Graphical analysis tool to find all open reading frames: Prokaryotes, Eukaryotes [40] Regulatory Sequence Analysis Tools: Series of modular computer programs to detect regulatory signals in non-coding sequences: Fungi, Prokaryotes, Metazoa, Protist, Plants [41] [42] PHANOTATE: A tool to annotate phage genomes. Phages [43] SplicePredictor

  7. Bioconductor - Wikipedia

    en.wikipedia.org/wiki/Bioconductor

    Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology. Bioconductor is based primarily on the statistical R programming language , but does contain contributions in other programming languages.

  8. List of systems biology modeling software - Wikipedia

    en.wikipedia.org/wiki/List_of_systems_biology...

    The vast majority of modern systems biology modeling software support SBML, which is the de facto standard for exchanging models of biological cellular processes. Some tools also support CellML , a standard used for representing physiological processes.

  9. EMBOSS - Wikipedia

    en.wikipedia.org/wiki/EMBOSS

    emboss.open-bio.org EMBOSS is a free c software analysis package developed for the needs of the molecular biology and bioinformatics user community. [ 1 ] The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web.