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A core concept in Biopython is the biological sequence, and this is represented by the Seq class. [11] A Biopython Seq object is similar to a Python string in many respects: it supports the Python slice notation, can be concatenated with other sequences and is immutable. In addition, it includes sequence-specific methods and specifies the ...
The include: DNA Data Bank of Japan (National Institute of Genetics) EMBL (European Bioinformatics Institute) GenBank (National Center for Biotechnology Information) DDBJ (Japan), GenBank (USA) and European Nucleotide Archive (Europe) are repositories for nucleotide sequence data from all organisms.
Website. ncbi.nlm.nih.gov. The National Center for Biotechnology Information (NCBI) [1][2] is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is located in Bethesda, Maryland, and was founded in 1988 ...
The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations. It is produced and maintained by the National Center for Biotechnology Information (NCBI; a part of the National Institutes of Health in the United States) as part of the International Nucleotide Sequence Database Collaboration (INSDC).
Yes - samples and sample groups. BioSamples (BioSD) is a database at European Bioinformatics Institute for the information about the biological samples used in sequencing. [1] It stores submitter-supplied metadata about the biological materials from which data stored in the National Center for Biotechnology Information ’s (NCBI) primary data ...
curated non-redundant sequence database of genomes. The Reference Sequence (RefSeq) database [1] is an open access, annotated and curated collection of publicly available nucleotide sequences (DNA, RNA) and their protein products. RefSeq was introduced in 2000. [2][3] This database is built by National Center for Biotechnology Information (NCBI ...
The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences. [1] It involves the following computerized databases: NIG 's DNA Data Bank of Japan (Japan), NCBI 's GenBank (USA) and the EMBL - EBI 's European Nucleotide Archive (EMBL).
GeneCards. GeneCards is a database of human genes that provides genomic, proteomic, transcriptomic, genetic and functional information on all known and predicted human genes. [1][2][3][4] It is being developed and maintained by the Crown Human Genome Center at the Weizmann Institute of Science, in collaboration with LifeMap Sciences.