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UpSet plots are a data visualization method for showing set data with more than three intersecting sets. UpSet shows intersections in a matrix, with the rows of the matrix corresponding to the sets, and the columns to the intersections between these sets (or vice versa). The size of the sets and of the intersections are shown as bar charts.
R is a programming language for statistical computing and data visualization. It has been adopted in the fields of data mining, bioinformatics and data analysis. [9] The core R language is augmented by a large number of extension packages, containing reusable code, documentation, and sample data. R software is open-source and free software.
Plotly is a technical computing company headquartered in Montreal, Quebec, that develops online data analytics and visualization tools. Plotly provides online graphing, analytics, and statistics tools for individuals and collaboration, as well as scientific graphing libraries for Python, R, MATLAB, Perl, Julia, Arduino, JavaScript [1] and REST.
RStudio IDE (or RStudio) is an integrated development environment for R, a programming language for statistical computing and graphics. It is available in two formats: RStudio Desktop is a regular desktop application while RStudio Server runs on a remote server and allows accessing RStudio using a web browser.
Vega is used in the back end of several data visualization systems, for example Voyager. [4] [5] Chart specifications are written in JSON and rendered in a browser or exported to either vector or bitmap images. Bindings for Vega-Lite have been written in several programming languages, such as the Python package Altair, [6] to make
Orange is an open-source software package released under GPL and hosted on GitHub.Versions up to 3.0 include core components in C++ with wrappers in Python.From version 3.0 onwards, Orange uses common Python open-source libraries for scientific computing, such as numpy, scipy and scikit-learn, while its graphical user interface operates within the cross-platform Qt framework.
3D and volume visualization, Curve and peak fitting, Signal processing, Image processing ILNumerics: Math library for .NET / C#: GPL / proprietary: No 2006: June 11, 2015 / v4.8: Windows and Linux: Math library with rich visualization features (interactive 3D scenes, scientific plotting) and MATLAB-like syntax. Ipe: GUI, XML: GPL: Yes 1993 ...
Users can download the raw PAE data for all residue pairs in a custom JSON format for further analysis or visualization using a programming language such as Python. The format of the JSON file is as follows: