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In DNA-ligand binding studies, the ligand can be a small molecule, ion, [1] or protein [2] which binds to the DNA double helix. The relationship between ligand and binding partner is a function of charge, hydrophobicity, and molecular structure. Binding occurs by intermolecular forces, such as ionic bonds, hydrogen bonds and Van der Waals forces.
The metal–ligand bond can be further stabilised by a formal donation of electron density back to the ligand in a process known as back-bonding. In this case a filled, central-atom-based orbital donates density into the LUMO of the (coordinated) ligand. Carbon monoxide is the preeminent example a ligand that engages metals via back-donation.
In chemistry, linkage isomerism or ambidentate isomerism is a form of structural isomerism in which certain coordination compounds have the same composition but differ in which atom of the ligand is bonded to the metal. Typical ligands that give rise to linkage isomers are: cyanide, CN − – isocyanide, NC −; cyanate, OCN − – isocyanate ...
Thiocyanate can bind metals at either sulfur or nitrogen — it is an ambidentate ligand. Other factors, e.g. kinetics and solubility, sometimes influence the observed isomer. For example, [Co(NH 3) 5 (NCS)] 2+ is the thermodynamic isomer, but [Co(NH 3) 5 (SCN)] 2+ forms as the kinetic product of the reaction of thiocyanate salts with [Co(NH 3 ...
Thiocyanate [6] is known to be an important part in the biosynthesis of hypothiocyanite by a lactoperoxidase. [7] [8] [9] Thus the complete absence of thiocyanate or reduced thiocyanate [10] in the human body, (e.g., cystic fibrosis) is damaging to the human host defense system.
The denticity of a ligand is described with the Greek letter κ ('kappa'). [3] For example, κ 6-EDTA describes an EDTA ligand that coordinates through 6 non-contiguous atoms. Denticity is different from hapticity because hapticity refers exclusively to ligands where the coordinating atoms are contiguous. In these cases the η ('eta') notation ...
The cyanate ion is an ambidentate ligand, forming complexes with a metal ion in which either the nitrogen or oxygen atom may be the electron-pair donor. It can also act as a bridging ligand. Compounds that contain the cyanate functional group, −O−C≡N, are known as cyanates or cyanate esters.
In biochemistry and molecular biology, a binding site is a region on a macromolecule such as a protein that binds to another molecule with specificity. [1] The binding partner of the macromolecule is often referred to as a ligand. [2]