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Nutritional genomics, also known as nutrigenomics, is a science studying the relationship between human genome, human nutrition and health. People in the field work toward developing an understanding of how the whole body responds to a food via systems biology, as well as single gene/single food compound relationships.
A transcriptome-wide analysis in mice found that a protein-restricted (PR) diet during gestation resulted in differential gene expression in approximately 1% of the fetal genes analyzed (235/22,690). Specifically, increased expression was seen in genes involved in the p53 pathway, apoptosis , negative regulators of cell metabolism, and genes ...
Furthermore, nutrition can affect methylation as the process continues throughout an individual’s adult life. Because of this, nutritional epigeneticists have studied food as a form of molecular exposure. [1] DNA methylation is the addition of a methyl group on a cytosine ring of DNA. [15]
Gene-set analysis (for example using tools like DAVID and GoSeq) has been shown to be severely biased when applied to high-throughput methylation data (e.g. genome-wide bisulfite sequencing); it has been suggested that this can be corrected using sample label permutations or using a statistical model to control for differences in the numberes ...
When DNA methylation occurs at promoter regions, the sites of transcription initiation, it has the effect of repressing gene expression. This is in contrast to unmethylated promoter regions which are associated with actively expressed genes. [9] The mechanism by which DNA methylation represses gene expression is a multi-step process.
17314 Ensembl ENSG00000170430 ENSMUSG00000054612 UniProt P16455 P26187 RefSeq (mRNA) NM_002412 NM_008598 NM_001377037 RefSeq (protein) NP_002403 NP_032624 NP_001363966 Location (UCSC) Chr 10: 129.47 – 129.77 Mb Chr 7: 136.5 – 136.73 Mb PubMed search Wikidata View/Edit Human View/Edit Mouse Methylated-DNA--protein-cysteine methyltransferase (MGMT), also known as O 6 -alkylguanine DNA ...
The modification may also occur at other sites, [4] but methylation at either of these sites can repress gene expression by either interfering with the binding of transcription factors or modifying chromatin structure to a repressive state. [5] Disease condition studies have largely fueled the effort in understanding the role of DNA methylation.
Mouse Genome Informatics (MGI) is a free, online database and bioinformatics resource hosted by The Jackson Laboratory, with funding by the National Human Genome Research Institute (NHGRI), the National Cancer Institute (NCI), and the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD). [1]